Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-340P Gene

Subcategory (RNA class) for RNU6-340P Gene

snRNA

Aliases for RNU6-340P Gene

  • RNA, U6 Small Nuclear 340, Pseudogene 2 3 5

External Ids for RNU6-340P Gene

ORGUL Members for RNU6-340P Gene

Previous GeneCards Identifiers for RNU6-340P Gene

  • GC00U934514

Summaries for RNU6-340P Gene

GeneCards Summary for RNU6-340P Gene

RNU6-340P (RNA, U6 Small Nuclear 340, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-340P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-340P Gene

Genomics for RNU6-340P Gene

GeneHancer (GH) Regulatory Elements for RNU6-340P Gene

Promoters and enhancers for RNU6-340P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I002588 Enhancer 0.9 Ensembl ENCODE 11.2 +60.1 60057 3 PAF1 SOX5 GATAD2A FOXA2 HLF CEBPB EBF1 CEBPG KAT8 ZKSCAN1 RNU6-340P METTL4 KATNBL1P3 NDC80 GC18M002508
GH18I002679 Enhancer 0.8 dbSUPER 11.4 -37.1 -37148 15.8 YBX3 HDGF ARNT NFRKB ZBTB40 KLF5 NCOA2 ZNF280A CBX5 ZNF143 MYL12A RNU6-340P EMILIN2 TGIF1 SMCHD1 GC18M002508 GC18M002724 ENSG00000266049
GH18I002604 Enhancer 0.7 Ensembl ENCODE 11.6 +44.0 44016 3.5 FOXA2 ZSCAN4 ELF1 MLLT1 ZBTB40 GABPA METTL4 NDC80 RNU6-340P KATNBL1P3 GC18P002621 GC18M002508
GH18I002671 Enhancer 0.6 dbSUPER 11.9 -24.9 -24892 6.6 BCOR CEBPB ZMYM3 CEBPG ZNF316 ADNP TRIM24 KDM1A PRDM1 RNU6-340P EMILIN2 GC18M002508 SMCHD1 GC18M002724
GH18I002698 Enhancer 0.4 dbSUPER 11.3 -50.1 -50121 2 BCOR ZMYM3 RNU6-340P EMILIN2 SMCHD1 GC18M002724 GC18M002508 ENSG00000266049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-340P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-340P Gene

Genomic Locations for RNU6-340P Gene
chr18:2,649,761-2,649,867
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-340P Gene

Genes around RNU6-340P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-340P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-340P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-340P Gene

Proteins for RNU6-340P Gene

Post-translational modifications for RNU6-340P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-340P Gene

Domains & Families for RNU6-340P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-340P Gene

Function for RNU6-340P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-340P Gene

Localization for RNU6-340P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-340P Gene

Pathways & Interactions for RNU6-340P Gene

SuperPathways for RNU6-340P Gene

No Data Available

Interacting Proteins for RNU6-340P Gene

Gene Ontology (GO) - Biological Process for RNU6-340P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-340P Gene

Drugs & Compounds for RNU6-340P Gene

No Compound Related Data Available

Transcripts for RNU6-340P Gene

mRNA/cDNA for RNU6-340P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-340P Gene

No ASD Table

Relevant External Links for RNU6-340P Gene

GeneLoc Exon Structure for
RNU6-340P
ECgene alternative splicing isoforms for
RNU6-340P

Expression for RNU6-340P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-340P Gene

genes like me logo Genes that share expression patterns with RNU6-340P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-340P Gene

Orthologs for RNU6-340P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-340P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 91 (a)
OneToOne
Species where no ortholog for RNU6-340P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-340P Gene

ENSEMBL:
Gene Tree for RNU6-340P (if available)
TreeFam:
Gene Tree for RNU6-340P (if available)

Paralogs for RNU6-340P Gene

No data available for Paralogs for RNU6-340P Gene

Variants for RNU6-340P Gene

Additional Variant Information for RNU6-340P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-340P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-340P Gene

Disorders for RNU6-340P Gene

No disorders were found for RNU6-340P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-340P Gene

Publications for RNU6-340P Gene

No publications were found for RNU6-340P Gene.

Products for RNU6-340P Gene

Sources for RNU6-340P Gene

Content
Loading form....