Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-33P Gene

Subcategory (RNA class) for RNU6-33P Gene

snRNA

Aliases for RNU6-33P Gene

  • RNA, U6 Small Nuclear 33, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 33 2
  • RNU6-33 3

External Ids for RNU6-33P Gene

ORGUL Members for RNU6-33P Gene

Previous HGNC Symbols for RNU6-33P Gene

  • RNU6-33

Previous GeneCards Identifiers for RNU6-33P Gene

  • GC04M089610

Summaries for RNU6-33P Gene

GeneCards Summary for RNU6-33P Gene

RNU6-33P (RNA, U6 Small Nuclear 33, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-33P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-33P Gene

Genomics for RNU6-33P Gene

GeneHancer (GH) Regulatory Elements for RNU6-33P Gene

Promoters and enhancers for RNU6-33P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I088696 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.4 -12.7 -12667 2.1 PKNOX1 ATF1 SIN3A NFXL1 YY1 TCF12 EGR1 CREM ZNF263 ZBTB2 NAP1L5 GC04M088685 RNU6-33P HERC3
GH04I088591 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.2 +92.2 92199 3.1 PKNOX1 CLOCK ATF1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 YY1 ELK1 HERC3 GC04M088591 LOC100129137 PIGY PYURF FAM13A-AS1 RNU6-33P GC04M088685
GH04I088608 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +73.3 73346 6 PKNOX1 SMAD1 RB1 BMI1 FEZF1 ZBTB40 BATF IRF4 ZSCAN5C ATF7 HERC3 LOC100129137 PIGY PYURF NAP1L5 FAM13A-AS1 PPM1K GC04M088591 GC04M088685 RNU6-33P
GH04I088658 Enhancer 1 Ensembl ENCODE 0.3 +24.2 24188 3.8 ELF3 FOXA2 ARID4B RAD21 ZNF143 RCOR1 FOS ZNF654 RXRA CEBPB PIGY PYURF HERC3 LOC100129137 NAP1L5 FAM13A-AS1 RNU6-33P GC04M088685 GC04M088591
GH04I088598 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +84.7 84686 3.1 FOXA2 SOX6 JUN DACH1 CEBPB EP300 RFX5 FOXA1 FOSL1 GATA3 LOC100129137 HERC3 PIGY PYURF NAP1L5 FAM13A-AS1 GC04M088591 GC04M088685 RNU6-33P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-33P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-33P Gene

Genomic Locations for RNU6-33P Gene
chr4:88,684,848-88,684,954
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand
chr4:89,605,999-89,606,105
(GRCh37/hg19)

Genomic View for RNU6-33P Gene

Genes around RNU6-33P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-33P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-33P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RNU6-33P Gene

Proteins for RNU6-33P Gene

Post-translational modifications for RNU6-33P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-33P Gene

Domains & Families for RNU6-33P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-33P Gene

Function for RNU6-33P Gene

Phenotypes From GWAS Catalog for RNU6-33P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-33P Gene

Localization for RNU6-33P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-33P Gene

Pathways & Interactions for RNU6-33P Gene

SuperPathways for RNU6-33P Gene

No Data Available

Interacting Proteins for RNU6-33P Gene

Gene Ontology (GO) - Biological Process for RNU6-33P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-33P Gene

Drugs & Compounds for RNU6-33P Gene

No Compound Related Data Available

Transcripts for RNU6-33P Gene

mRNA/cDNA for RNU6-33P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-33P Gene

No ASD Table

Relevant External Links for RNU6-33P Gene

GeneLoc Exon Structure for
RNU6-33P
ECgene alternative splicing isoforms for
RNU6-33P

Expression for RNU6-33P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-33P Gene

genes like me logo Genes that share expression patterns with RNU6-33P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-33P Gene

Orthologs for RNU6-33P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-33P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22352 34
  • 99 (a)
OneToMany
Gm24584 34
  • 99 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 98 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 94 (a)
ManyToMany
Species where no ortholog for RNU6-33P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-33P Gene

ENSEMBL:
Gene Tree for RNU6-33P (if available)
TreeFam:
Gene Tree for RNU6-33P (if available)

Paralogs for RNU6-33P Gene

No data available for Paralogs for RNU6-33P Gene

Variants for RNU6-33P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-33P Gene

Variant ID Type Subtype PubMed ID
nsv461576 CNV gain 19166990
nsv594806 CNV gain 21841781

Additional Variant Information for RNU6-33P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-33P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-33P Gene

Disorders for RNU6-33P Gene

Additional Disease Information for RNU6-33P

No disorders were found for RNU6-33P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-33P Gene

Publications for RNU6-33P Gene

No publications were found for RNU6-33P Gene.

Products for RNU6-33P Gene

Sources for RNU6-33P Gene

Content
Loading form....