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Aliases for RNU6-30P Gene

Subcategory (RNA class) for RNU6-30P Gene

snRNA

Aliases for RNU6-30P Gene

  • RNA, U6 Small Nuclear 30, Pseudogene 2 3
  • RNA, U6 Small Nuclear 30 2
  • RNU6-30 3

External Ids for RNU6-30P Gene

ORGUL Members for RNU6-30P Gene

Previous Symbols for RNU6-30P Gene

  • RNU6-30

Summaries for RNU6-30P Gene

GeneCards Summary for RNU6-30P Gene

RNU6-30P (RNA, U6 Small Nuclear 30, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-30P Gene

Genomics for RNU6-30P Gene

Genomic Location for RNU6-30P Gene

Start:
101,634,006 bp from pter
End:
101,634,112 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-30P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU6-30P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-30P Gene

No data available for Regulatory Elements for RNU6-30P Gene

Proteins for RNU6-30P Gene

Post-translational modifications for RNU6-30P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-30P Gene

Domains for RNU6-30P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU6-30P Gene

Function for RNU6-30P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU6-30P Gene

Localization for RNU6-30P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU6-30P Gene

Pathways for RNU6-30P Gene

SuperPathways for RNU6-30P Gene

No Data Available

Interacting Proteins for RNU6-30P Gene

Gene Ontology (GO) - Biological Process for RNU6-30P Gene

None

No data available for Pathways by source for RNU6-30P Gene

Transcripts for RNU6-30P Gene

mRNA/cDNA for RNU6-30P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-30P Gene

No ASD Table

Relevant External Links for RNU6-30P Gene

GeneLoc Exon Structure for
RNU6-30P
ECgene alternative splicing isoforms for
RNU6-30P

Expression for RNU6-30P Gene

mRNA expression in normal human tissues for RNU6-30P Gene

genes like me logo Genes that share expressions with RNU6-30P: view

Orthologs for RNU6-30P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-30P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 37
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 37
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24870 37
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 37
  • 94 (a)
ManyToMany
Species with no ortholog for RNU6-30P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-30P Gene

ENSEMBL:
Gene Tree for RNU6-30P (if available)
TreeFam:
Gene Tree for RNU6-30P (if available)

Paralogs for RNU6-30P Gene

No data available for Paralogs for RNU6-30P Gene

Variants for RNU6-30P Gene

Sequence variations from dbSNP and Humsavar for RNU6-30P Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2858168 -- 101,635,297(+) TGAAT(C/T)CAAAT upstream-variant-2KB
rs5951368 -- 101,633,639(+) AATAA(A/T)TTACT downstream-variant-500B
rs12849189 -- 101,635,753(+) GGAGT(G/T)ACTAC upstream-variant-2KB
rs62601907 -- 101,635,351(+) CCCCC(A/G)ACTCC upstream-variant-2KB
rs62601908 -- 101,635,537(+) TGAAG(C/T)TAAGA upstream-variant-2KB

Relevant External Links for RNU6-30P Gene

HapMap Linkage Disequilibrium report
RNU6-30P

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNU6-30P Gene

Disorders for RNU6-30P Gene

No disorders were found for RNU6-30P Gene.

No data available for UniProtKB/Swiss-Prot for RNU6-30P Gene

Publications for RNU6-30P Gene

No publications were found for RNU6-30P Gene.

Products for RNU6-30P Gene

Sources for RNU6-30P Gene

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