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Aliases for RNU6-271P Gene

Subcategory (RNA class) for RNU6-271P Gene

snRNA

Aliases for RNU6-271P Gene

  • RNA, U6 Small Nuclear 271, Pseudogene 2 3 5

External Ids for RNU6-271P Gene

ORGUL Members for RNU6-271P Gene

Previous GeneCards Identifiers for RNU6-271P Gene

  • GC10P097873
  • GC00U935009

Summaries for RNU6-271P Gene

GeneCards Summary for RNU6-271P Gene

RNU6-271P (RNA, U6 Small Nuclear 271, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-271P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-271P Gene

Genomics for RNU6-271P Gene

GeneHancer (GH) Regulatory Elements for RNU6-271P Gene

Promoters and enhancers for RNU6-271P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I096088 Promoter/Enhancer 1.6 Ensembl ENCODE 12.2 -22.9 -22900 2.2 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ENTPD1-AS1 TCTN3 ZNF518A RPL13AP5 NPM1P26 CCNJ RNU6-271P LCOR TM9SF3 CC2D2B
GH10I096286 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +176.2 176189 5.2 PKNOX1 FOXA2 SMAD1 ZNF133 IRF4 YY1 ATF7 RUNX3 RXRA JUNB BLNK OPALIN RNU6-271P TLL2 DNTT GC10M096095
GH10I096292 Enhancer 1 Ensembl ENCODE dbSUPER 9.7 +180.8 180783 1.1 CTCF ZNF654 FOXA2 TRIM22 REST IRF4 RAD21 RFX5 SKI SMC3 BLNK OPALIN RNU6-271P ENSG00000229418 DNTT GC10M096095
GH10I096072 Enhancer 0.7 ENCODE 10.5 -39.9 -39868 0.2 MEIS2 PKNOX1 TEAD4 TAL1 E4F1 TCF12 CTBP1 NCOR1 CBFA2T2 SMARCE1 RNU6-271P MIR3157 GC10P096083 ENTPD1-AS1
GH10I096285 Enhancer 0.7 ENCODE 9.7 +172.8 172752 0.2 PKNOX1 FOXA2 RFX1 RXRA TAF1 MAX SIN3A REST BMI1 NR2F2 OPALIN RNU6-271P BLNK DNTT GC10M096095
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-271P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-271P Gene

Genomic Locations for RNU6-271P Gene
chr10:96,112,747-96,112,851
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for RNU6-271P Gene

Genes around RNU6-271P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-271P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-271P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-271P Gene

Proteins for RNU6-271P Gene

Post-translational modifications for RNU6-271P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-271P Gene

Domains & Families for RNU6-271P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-271P Gene

Function for RNU6-271P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-271P Gene

Localization for RNU6-271P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-271P Gene

Pathways & Interactions for RNU6-271P Gene

SuperPathways for RNU6-271P Gene

No Data Available

Interacting Proteins for RNU6-271P Gene

Gene Ontology (GO) - Biological Process for RNU6-271P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-271P Gene

Drugs & Compounds for RNU6-271P Gene

No Compound Related Data Available

Transcripts for RNU6-271P Gene

mRNA/cDNA for RNU6-271P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-271P Gene

No ASD Table

Relevant External Links for RNU6-271P Gene

GeneLoc Exon Structure for
RNU6-271P
ECgene alternative splicing isoforms for
RNU6-271P

Expression for RNU6-271P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-271P Gene

Orthologs for RNU6-271P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-271P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 93 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23095 34
  • 93 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 93 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 92 (a)
ManyToMany
Species where no ortholog for RNU6-271P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-271P Gene

ENSEMBL:
Gene Tree for RNU6-271P (if available)
TreeFam:
Gene Tree for RNU6-271P (if available)

Paralogs for RNU6-271P Gene

No data available for Paralogs for RNU6-271P Gene

Variants for RNU6-271P Gene

Additional Variant Information for RNU6-271P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-271P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-271P Gene

Disorders for RNU6-271P Gene

No disorders were found for RNU6-271P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-271P Gene

Publications for RNU6-271P Gene

No publications were found for RNU6-271P Gene.

Products for RNU6-271P Gene

Sources for RNU6-271P Gene

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