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Aliases for RNU6-225P Gene

Subcategory (RNA class) for RNU6-225P Gene

snRNA

Aliases for RNU6-225P Gene

  • RNA, U6 Small Nuclear 225, Pseudogene 2 3 5

External Ids for RNU6-225P Gene

ORGUL Members for RNU6-225P Gene

Previous GeneCards Identifiers for RNU6-225P Gene

  • GC22M020772
  • GC00U934425

Summaries for RNU6-225P Gene

GeneCards Summary for RNU6-225P Gene

RNU6-225P (RNA, U6 Small Nuclear 225, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-225P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-225P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-225P Gene

Genomics for RNU6-225P Gene

GeneHancer (GH) Regulatory Elements for RNU6-225P Gene

Promoters and enhancers for RNU6-225P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I020417 Enhancer 1.4 FANTOM5 Ensembl ENCODE 550.8 -1.4 -1416 1 HDGF SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 REST KAT8 RNU6-225P MED15 PI4KA GC22M020421
GH22I020543 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.7 -128.7 -128663 3.6 HDGF PKNOX1 SMAD1 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 CAVIN1 MED15 TRMT2A LZTR1 DGCR8 ABHD17AP4 KLHL22 RNU6-225P SCARF2 THAP7 RANBP1
GH22I020462 Enhancer 0.8 Ensembl ENCODE 12.2 -47.1 -47130 2.8 PHF21A ZNF740 YBX1 POLR2A TARDBP PRDM10 RUNX3 SPI1 MED15 SCARF2 RNU6-225P KLHL22 ZNF74 USP41 ENSG00000236003 LZTR1 PIR53917 RNY1P9
GH22I020542 Enhancer 0.6 ENCODE dbSUPER 10.6 -126.0 -126044 1.2 NFATC3 ZNF354B MED15 LZTR1 DGCR8 KLHL22 TRMT2A RNU6-225P THAP7 LOC100420177 ZDHHC8 THAP7-AS1
GH22I020393 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +22.7 22731 1.7 HDGF PKNOX1 SMAD1 ARNT SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ZNF74 RPL7AP70 MED15 TRMT2A ENSG00000273300 LZTR1 UFD1 RPL8P5 DGCR8 RNU6-225P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-225P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-225P Gene

Genomic Locations for RNU6-225P Gene
chr22:20,416,797-20,416,899
(GRCh38/hg38)
Size:
103 bases
Orientation:
Minus strand

Genomic View for RNU6-225P Gene

Genes around RNU6-225P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-225P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-225P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-225P Gene

ORGUL Member Location for RNU6-225P Gene

ORGUL Member Location for RNU6-225P gene

Proteins for RNU6-225P Gene

Post-translational modifications for RNU6-225P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-225P Gene

Domains & Families for RNU6-225P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-225P Gene

Function for RNU6-225P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-225P Gene

Localization for RNU6-225P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-225P Gene

Pathways & Interactions for RNU6-225P Gene

SuperPathways for RNU6-225P Gene

No Data Available

Interacting Proteins for RNU6-225P Gene

Gene Ontology (GO) - Biological Process for RNU6-225P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-225P Gene

Drugs & Compounds for RNU6-225P Gene

No Compound Related Data Available

Transcripts for RNU6-225P Gene

mRNA/cDNA for RNU6-225P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-225P Gene

No ASD Table

Relevant External Links for RNU6-225P Gene

GeneLoc Exon Structure for
RNU6-225P
ECgene alternative splicing isoforms for
RNU6-225P

Expression for RNU6-225P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-225P Gene

genes like me logo Genes that share expression patterns with RNU6-225P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-225P Gene

Orthologs for RNU6-225P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-225P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25450 34
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 86 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34 34
  • 77 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U6 34
  • 84 (a)
OneToMany
Species where no ortholog for RNU6-225P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-225P Gene

ENSEMBL:
Gene Tree for RNU6-225P (if available)
TreeFam:
Gene Tree for RNU6-225P (if available)

Paralogs for RNU6-225P Gene

No data available for Paralogs for RNU6-225P Gene

Variants for RNU6-225P Gene

Additional Variant Information for RNU6-225P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-225P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-225P Gene

Disorders for RNU6-225P Gene

No disorders were found for RNU6-225P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-225P Gene

Publications for RNU6-225P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-225P Gene

Sources for RNU6-225P Gene

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