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Aliases for RNU6-21P Gene

Subcategory (RNA class) for RNU6-21P Gene

snRNA

Aliases for RNU6-21P Gene

  • RNA, U6 Small Nuclear 21, Pseudogene 2 3
  • RNA, U6 Small Nuclear 21 2
  • RNU6-21 3

External Ids for RNU6-21P Gene

ORGUL Members for RNU6-21P Gene

Previous Symbols for RNU6-21P Gene

  • RNU6-21

Summaries for RNU6-21P Gene

GeneCards Summary for RNU6-21P Gene

RNU6-21P (RNA, U6 Small Nuclear 21, Pseudogene) is a Pseudogene, and belongs to the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-21P Gene

Genomics for RNU6-21P Gene

Genomic Location for RNU6-21P Gene

Start:
62,187,540 bp from pter
End:
62,187,646 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-21P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU6-21P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-21P Gene

No data available for Regulatory Elements for RNU6-21P Gene

Proteins for RNU6-21P Gene

Post-translational modifications for RNU6-21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-21P Gene

Domains for RNU6-21P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-21P Gene

Function for RNU6-21P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU6-21P Gene

Localization for RNU6-21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-21P Gene

Pathways for RNU6-21P Gene

SuperPathways for RNU6-21P Gene

No Data Available

Interacting Proteins for RNU6-21P Gene

Gene Ontology (GO) - Biological Process for RNU6-21P Gene

None

No data available for Pathways by source for RNU6-21P Gene

Transcripts for RNU6-21P Gene

mRNA/cDNA for RNU6-21P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-21P Gene

No ASD Table

Relevant External Links for RNU6-21P Gene

GeneLoc Exon Structure for
RNU6-21P
ECgene alternative splicing isoforms for
RNU6-21P

Expression for RNU6-21P Gene

mRNA expression in normal human tissues for RNU6-21P Gene

genes like me logo Genes that share expressions with RNU6-21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNU6-21P Gene

Orthologs for RNU6-21P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-21P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 36
  • 98 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 36
  • 95 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 36
  • 93 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23137 36
  • 93 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 36
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 36
  • 92 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 36
  • 94 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 36
  • 90 (a)
ManyToMany
Species with no ortholog for RNU6-21P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-21P Gene

ENSEMBL:
Gene Tree for RNU6-21P (if available)
TreeFam:
Gene Tree for RNU6-21P (if available)

Paralogs for RNU6-21P Gene

No data available for Paralogs for RNU6-21P Gene

Variants for RNU6-21P Gene

Sequence variations from dbSNP and Humsavar for RNU6-21P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs4238745 -- 62,188,066(+) CTCAG(C/T)CTTCA upstream-variant-2KB
rs4783769 -- 62,188,002(+) TACAG(A/C)GTTTG upstream-variant-2KB
rs7201066 -- 62,189,002(+) TAACT(C/T)GCTCA upstream-variant-2KB
rs7201072 -- 62,189,008(+) GCTCA(A/T)ATTAA upstream-variant-2KB
rs7499518 -- 62,188,505(+) AATTA(C/T)ACATG upstream-variant-2KB

Relevant External Links for RNU6-21P Gene

HapMap Linkage Disequilibrium report
RNU6-21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNU6-21P Gene

Disorders for RNU6-21P Gene

No disorders were found for RNU6-21P Gene.

No data available for UniProtKB/Swiss-Prot for RNU6-21P Gene

Publications for RNU6-21P Gene

No publications were found for RNU6-21P Gene.

Products for RNU6-21P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU6-21P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU6-21P
    • Block miRNA regulation of RNU6-21P using miScript Target Protectors

    Sources for RNU6-21P Gene

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