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Aliases for RNU6-218P Gene

Subcategory (RNA class) for RNU6-218P Gene

snRNA

Aliases for RNU6-218P Gene

  • RNA, U6 Small Nuclear 218, Pseudogene 2 3 5

External Ids for RNU6-218P Gene

ORGUL Members for RNU6-218P Gene

Previous GeneCards Identifiers for RNU6-218P Gene

  • GC07P006101
  • GC00U936093

Summaries for RNU6-218P Gene

GeneCards Summary for RNU6-218P Gene

RNU6-218P (RNA, U6 Small Nuclear 218, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-218P Gene

Genomics for RNU6-218P Gene

Regulatory Elements for RNU6-218P Gene

Enhancers for RNU6-218P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F006103 1.5 FANTOM5 ENCODE 11.9 +47.9 47935 3.8 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 EIF2AK1 KDELR2 C7orf26 ZNF316 RNU6-218P USP42 PMS2 CCZ1 RSPH10B GC07M006104
GH07F006317 1.1 Ensembl ENCODE 11.8 +260.5 260549 1.5 ARID4B ZNF48 RARA HMG20B SP5 NFYC CEBPB PPARG NR2F2 ETV4 CYTH3 FAM220A EIF2AK1 RNU6-218P GC07P006327 GC07M006297
GH07F006025 1 Ensembl ENCODE 12.4 -30.7 -30743 2.7 CTCF TFAP4 SAP130 HLF ARID4B CEBPB EBF1 ZIC2 RAD21 ZNF121 EIF2AK1 RNU6-218P ZDHHC4 ANKRD61 ENSG00000207217
GH07F006023 1 ENCODE 11.8 -33.3 -33321 1.9 PKNOX1 ATF1 ARNT CREB3L1 ELK1 GATA2 NCOA1 REST CREB3 MBD2 EIF2AK1 ZNF316 C7orf26 RNU6-218P ANKRD61 ENSG00000207217
GH07F006031 0.7 ENCODE 12.3 -25.1 -25097 1.1 ZNF263 PKNOX1 MTA2 TAL1 BHLHE40 JUNB BMI1 TBX21 ARID1B ZNF121 EIF2AK1 RNU6-218P CCZ1 ANKRD61 RN7SL851P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-218P on UCSC Golden Path with GeneCards custom track

Promoters for RNU6-218P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157018 1200 2201 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF207 SP3 SP5

Genomic Location for RNU6-218P Gene

Chromosome:
7
Start:
6,057,500 bp from pter
End:
6,057,604 bp from pter
Size:
105 bases
Orientation:
Plus strand

Genomic View for RNU6-218P Gene

Genes around RNU6-218P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-218P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-218P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-218P Gene

Proteins for RNU6-218P Gene

Post-translational modifications for RNU6-218P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-218P Gene

Domains & Families for RNU6-218P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-218P Gene

Function for RNU6-218P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-218P Gene

Localization for RNU6-218P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-218P Gene

Pathways & Interactions for RNU6-218P Gene

SuperPathways for RNU6-218P Gene

No Data Available

Interacting Proteins for RNU6-218P Gene

Gene Ontology (GO) - Biological Process for RNU6-218P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-218P Gene

Transcripts for RNU6-218P Gene

mRNA/cDNA for RNU6-218P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-218P Gene

No ASD Table

Relevant External Links for RNU6-218P Gene

GeneLoc Exon Structure for
RNU6-218P
ECgene alternative splicing isoforms for
RNU6-218P

Expression for RNU6-218P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-218P Gene

genes like me logo Genes that share expression patterns with RNU6-218P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-218P Gene

Orthologs for RNU6-218P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-218P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25810 35
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 77 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 76 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 69 (a)
ManyToMany
Species where no ortholog for RNU6-218P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-218P Gene

ENSEMBL:
Gene Tree for RNU6-218P (if available)
TreeFam:
Gene Tree for RNU6-218P (if available)

Paralogs for RNU6-218P Gene

No data available for Paralogs for RNU6-218P Gene

Variants for RNU6-218P Gene

Relevant External Links for RNU6-218P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-218P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-218P Gene

Disorders for RNU6-218P Gene

No disorders were found for RNU6-218P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-218P Gene

Publications for RNU6-218P Gene

No publications were found for RNU6-218P Gene.

Products for RNU6-218P Gene

Sources for RNU6-218P Gene

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