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Aliases for RNU6-16P Gene

Subcategory (RNA class) for RNU6-16P Gene

snRNA

Aliases for RNU6-16P Gene

  • RNA, U6 Small Nuclear 16, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 16 2
  • RNU6-16 3

External Ids for RNU6-16P Gene

ORGUL Members for RNU6-16P Gene

Previous HGNC Symbols for RNU6-16P Gene

  • RNU6-16

Previous GeneCards Identifiers for RNU6-16P Gene

  • GC11M088348

Summaries for RNU6-16P Gene

GeneCards Summary for RNU6-16P Gene

RNU6-16P (RNA, U6 Small Nuclear 16, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-16P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-16P Gene

Genomics for RNU6-16P Gene

GeneHancer (GH) Regulatory Elements for RNU6-16P Gene

Promoters and enhancers for RNU6-16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I088553 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.2 +58.2 58193 4 CTCF MEIS2 JUN MAX CEBPG BRCA1 RAD21 POLR2A ZBTB48 SMC3 GRM5-AS1 RNU6-16P ENSG00000255102 ENSG00000255241 ENSG00000206690 GC11M088613 GRM5
GH11I088552 Enhancer 0.6 ENCODE 10.2 +60.3 60293 0.2 CTCF ZNF654 TRIM22 CEBPG REST RAD21 ZBTB48 ZNF143 SMC3 GRM5-AS1 RNU6-16P ENSG00000206690 ENSG00000255102 ENSG00000255241 GC11M088613 GRM5
GH11I088709 Enhancer 0.3 ENCODE 10.2 -96.9 -96857 0.1 SP1 RNU6-16P GC11M088613 GRM5
GH11I088534 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +75.8 75797 4.3 JUN BATF RAD21 BRCA1 RFX5 POLR2A RCOR1 ATF7 FOSL2 FOS GRM5-AS1 ENSG00000206690 ENSG00000255102 ENSG00000255241 CTSC GC11M088613 RNU6-16P GRM5
GH11I088543 Enhancer 1 Ensembl ENCODE 0.2 +68.3 68269 1.4 CTCF RB1 MAX ZNF2 IRF4 RAD21 RFX5 CC2D1A ARID2 SMC3 GRM5-AS1 ENSG00000255102 ENSG00000255241 ENSG00000206690 GC11M088613 RNU6-16P GRM5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-16P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-16P Gene

Genomic Locations for RNU6-16P Gene
chr11:88,612,805-88,612,911
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand
chr11:88,345,973-88,346,079
(GRCh37/hg19)

Genomic View for RNU6-16P Gene

Genes around RNU6-16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RNU6-16P Gene

Proteins for RNU6-16P Gene

Post-translational modifications for RNU6-16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-16P Gene

Domains & Families for RNU6-16P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-16P Gene

Function for RNU6-16P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-16P Gene

Localization for RNU6-16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-16P Gene

Pathways & Interactions for RNU6-16P Gene

SuperPathways for RNU6-16P Gene

No Data Available

Interacting Proteins for RNU6-16P Gene

Gene Ontology (GO) - Biological Process for RNU6-16P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-16P Gene

Drugs & Compounds for RNU6-16P Gene

No Compound Related Data Available

Transcripts for RNU6-16P Gene

mRNA/cDNA for RNU6-16P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-16P Gene

No ASD Table

Relevant External Links for RNU6-16P Gene

GeneLoc Exon Structure for
RNU6-16P
ECgene alternative splicing isoforms for
RNU6-16P

Expression for RNU6-16P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-16P Gene

genes like me logo Genes that share expression patterns with RNU6-16P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-16P Gene

Orthologs for RNU6-16P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-16P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm26285 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 97 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 90 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 89 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 82 (a)
ManyToMany
Species where no ortholog for RNU6-16P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-16P Gene

ENSEMBL:
Gene Tree for RNU6-16P (if available)
TreeFam:
Gene Tree for RNU6-16P (if available)

Paralogs for RNU6-16P Gene

No data available for Paralogs for RNU6-16P Gene

Variants for RNU6-16P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-16P Gene

Variant ID Type Subtype PubMed ID
nsv1035387 CNV gain 25217958

Additional Variant Information for RNU6-16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-16P Gene

Disorders for RNU6-16P Gene

Additional Disease Information for RNU6-16P

No disorders were found for RNU6-16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-16P Gene

Publications for RNU6-16P Gene

No publications were found for RNU6-16P Gene.

Products for RNU6-16P Gene

Sources for RNU6-16P Gene

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