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Aliases for RNU6-147P Gene

Subcategory (RNA class) for RNU6-147P Gene

snRNA

Aliases for RNU6-147P Gene

  • RNA, U6 Small Nuclear 147, Pseudogene 2 3 5

External Ids for RNU6-147P Gene

ORGUL Members for RNU6-147P Gene

Previous GeneCards Identifiers for RNU6-147P Gene

  • GC20P048590
  • GC00U934471

Summaries for RNU6-147P Gene

GeneCards Summary for RNU6-147P Gene

RNU6-147P (RNA, U6 Small Nuclear 147, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-147P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-147P Gene

Genomics for RNU6-147P Gene

Regulatory Elements for RNU6-147P Gene

Enhancers for RNU6-147P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G050070 1.6 Ensembl ENCODE dbSUPER 12.8 +99.4 99401 1.1 HDGF MLX CREB3L1 ARID4B SIN3A DMAP1 YBX1 ZBTB7B SLC30A9 ZNF143 SNAI1 RNU6-147P RNF114 ENSG00000199490 SPATA2 ENSG00000232043 MIR645 LINC01273 LOC105372655 GC20M050093
GH20G050085 1.5 Ensembl ENCODE dbSUPER 12.6 +114.5 114458 3.0 HDGF PKNOX1 SIN3A YBX1 ZNF2 ZBTB7B GTF3C2 ZNF143 ZNF207 FOS LINC01273 DPM1 RNU6-147P ENSG00000232043 PSMD10P1 MOCS3 ZFAS1 GC20M050093 LOC105372655
GH20G050019 1.4 Ensembl ENCODE dbSUPER 11.9 +48.3 48255 1.5 HDGF PKNOX1 NFIB RB1 SIN3A YBX1 ZBTB7B RAD21 RCOR1 FOS SNAI1 RNU6-147P LOC105372654
GH20G049945 1.2 ENCODE dbSUPER 12.7 -26.0 -25992 1.6 ELF3 MLX ARID4B THRB ZNF48 ZSCAN9 RARA CREM MIXL1 THAP11 SPATA2 RNU6-147P ENSG00000199490 SNAI1 RNF114 PIR42769
GH20G049999 1.1 FANTOM5 ENCODE 12.7 +27.4 27435 0.2 PKNOX1 EBF1 ZBTB7B RELA EED RELB IKZF2 CREM MTA2 BHLHE40 SLC9A8 RNU6-147P SNAI1 B4GALT5 CEBPB TMEM189 RNF114 LOC105372654
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-147P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-147P Gene

Chromosome:
20
Start:
49,972,106 bp from pter
End:
49,972,212 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-147P Gene

Genes around RNU6-147P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-147P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-147P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-147P Gene

ORGUL Member Location for RNU6-147P Gene

ORGUL Member Location for RNU6-147P gene

Proteins for RNU6-147P Gene

Post-translational modifications for RNU6-147P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-147P Gene

Domains & Families for RNU6-147P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-147P Gene

Function for RNU6-147P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-147P Gene

Localization for RNU6-147P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-147P Gene

Pathways & Interactions for RNU6-147P Gene

SuperPathways for RNU6-147P Gene

No Data Available

Interacting Proteins for RNU6-147P Gene

Gene Ontology (GO) - Biological Process for RNU6-147P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-147P Gene

Transcripts for RNU6-147P Gene

mRNA/cDNA for RNU6-147P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-147P Gene

No ASD Table

Relevant External Links for RNU6-147P Gene

GeneLoc Exon Structure for
RNU6-147P
ECgene alternative splicing isoforms for
RNU6-147P

Expression for RNU6-147P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-147P Gene

genes like me logo Genes that share expression patterns with RNU6-147P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-147P Gene

Orthologs for RNU6-147P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-147P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22663 35
  • 80 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 74 (a)
OneToOne
Species where no ortholog for RNU6-147P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-147P Gene

ENSEMBL:
Gene Tree for RNU6-147P (if available)
TreeFam:
Gene Tree for RNU6-147P (if available)

Paralogs for RNU6-147P Gene

No data available for Paralogs for RNU6-147P Gene

Variants for RNU6-147P Gene

Relevant External Links for RNU6-147P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-147P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-147P Gene

Disorders for RNU6-147P Gene

No disorders were found for RNU6-147P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-147P Gene

Publications for RNU6-147P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for RNU6-147P Gene

Sources for RNU6-147P Gene

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