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Aliases for RNU6-1336P Gene

Subcategory (RNA class) for RNU6-1336P Gene

snRNA

Aliases for RNU6-1336P Gene

  • RNA, U6 Small Nuclear 1336, Pseudogene 2 3 5

External Ids for RNU6-1336P Gene

ORGUL Members for RNU6-1336P Gene

Previous GeneCards Identifiers for RNU6-1336P Gene

  • GC04M169609
  • GC00U935631

Summaries for RNU6-1336P Gene

GeneCards Summary for RNU6-1336P Gene

RNU6-1336P (RNA, U6 Small Nuclear 1336, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-1336P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-1336P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-1336P Gene

Genomics for RNU6-1336P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1336P Gene

Promoters and enhancers for RNU6-1336P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I168629 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +50.9 50929 13 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ZNF213 FOS SP3 REST PALLD RNU6-1336P ENSG00000249623 BTF3L4P4 GC04M168514
GH04I168568 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +116.7 116696 2.6 INSM2 FEZF1 ZNF2 RFX5 ZNF335 TCF12 ZNF213 GATA2 ZNF366 ZNF350 PALLD RNU6-1336P ENSG00000249623 GC04P168581 DDX60L GC04M168514
GH04I168877 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10 -196.3 -196332 11.6 HDGF FOXA2 RAD21 RARA ATF7 FOS IKZF2 RUNX3 RXRA USF2 CBR4 PALLD ENSG00000249609 ENSG00000251445 RNY4P17 RNU6-1336P ENSG00000249623 RNU6-853P LOC102723331 GC04M168514
GH04I168612 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +68.7 68681 11.8 ZNF449 JUN NR2F1 CEBPB EP300 ATF2 SP1 ZSCAN21 JUND GATA3 PALLD ENSG00000249623 RNU6-1336P BTF3L4P4 GC04M168514
GH04I168557 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +126.3 126252 5.8 ZSCAN4 INSM2 ZNF366 HSF1 SCRT2 RCOR1 FOS ZNF362 CEBPB ZEB2 DDX60L RNU6-1336P PALLD ENSG00000249623 DDX60 GC04P168581 GC04M168514
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1336P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1336P Gene

Genomic Locations for RNU6-1336P Gene
chr4:168,686,608-168,686,716
(GRCh38/hg38)
Size:
109 bases
Orientation:
Minus strand

Genomic View for RNU6-1336P Gene

Genes around RNU6-1336P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1336P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1336P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1336P Gene

ORGUL Member Location for RNU6-1336P Gene

ORGUL Member Location for RNU6-1336P gene

Proteins for RNU6-1336P Gene

Post-translational modifications for RNU6-1336P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1336P Gene

Domains & Families for RNU6-1336P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1336P Gene

Function for RNU6-1336P Gene

Phenotypes From GWAS Catalog for RNU6-1336P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1336P Gene

Localization for RNU6-1336P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1336P Gene

Pathways & Interactions for RNU6-1336P Gene

SuperPathways for RNU6-1336P Gene

No Data Available

Interacting Proteins for RNU6-1336P Gene

Gene Ontology (GO) - Biological Process for RNU6-1336P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1336P Gene

Drugs & Compounds for RNU6-1336P Gene

No Compound Related Data Available

Transcripts for RNU6-1336P Gene

mRNA/cDNA for RNU6-1336P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1336P Gene

No ASD Table

Relevant External Links for RNU6-1336P Gene

GeneLoc Exon Structure for
RNU6-1336P
ECgene alternative splicing isoforms for
RNU6-1336P

Expression for RNU6-1336P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1336P Gene

genes like me logo Genes that share expression patterns with RNU6-1336P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1336P Gene

Orthologs for RNU6-1336P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1336P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25801 34
  • 89 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 85 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 81 (a)
ManyToMany
Species where no ortholog for RNU6-1336P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1336P Gene

ENSEMBL:
Gene Tree for RNU6-1336P (if available)
TreeFam:
Gene Tree for RNU6-1336P (if available)

Paralogs for RNU6-1336P Gene

No data available for Paralogs for RNU6-1336P Gene

Variants for RNU6-1336P Gene

Additional Variant Information for RNU6-1336P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1336P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1336P Gene

Disorders for RNU6-1336P Gene

No disorders were found for RNU6-1336P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1336P Gene

Publications for RNU6-1336P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-1336P Gene

Sources for RNU6-1336P Gene

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