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Aliases for RNU6-1336P Gene

Subcategory (RNA class) for RNU6-1336P Gene

snRNA

Aliases for RNU6-1336P Gene

  • RNA, U6 Small Nuclear 1336, Pseudogene 2 3 5

External Ids for RNU6-1336P Gene

ORGUL Members for RNU6-1336P Gene

Previous GeneCards Identifiers for RNU6-1336P Gene

  • GC04M169609
  • GC00U935631

Summaries for RNU6-1336P Gene

GeneCards Summary for RNU6-1336P Gene

RNU6-1336P (RNA, U6 Small Nuclear 1336, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-1336P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-1336P Gene

Genomics for RNU6-1336P Gene

Regulatory Elements for RNU6-1336P Gene

Enhancers for RNU6-1336P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F168629 1.4 FANTOM5 ENCODE 11.3 +50.9 50930 13.0 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 FOS SP3 REST TSHZ1 PALLD RNU6-1336P ENSG00000249623 BTF3L4P4
GH04F168877 1.5 FANTOM5 Ensembl ENCODE 10 -196.3 -196332 11.6 HDGF ZNF493 ZFP64 RARA EGR1 FOS ZNF202 ZNF680 ZNF654 ZBTB11 CBR4 HPF1 PALLD ENSG00000249609 ENSG00000251445 RNY4P17 RNU6-1336P ENSG00000249623 RNU6-853P LOC102723331
GH04F168612 1.3 FANTOM5 Ensembl ENCODE 11.1 +68.7 68682 11.8 ZNF146 JUN BHLHE40 CEBPB SIN3A EP300 ATF2 JUND SCRT2 FOS PALLD ENSG00000249623 RNU6-1336P BTF3L4P4
GH04F168568 1.4 FANTOM5 Ensembl ENCODE 10.2 +116.7 116696 2.6 INSM2 FEZF1 ZNF2 CBX5 ZNF366 GATA2 KLF7 NFYA OVOL3 ZEB2 PALLD RNU6-1336P ENSG00000249623 GC04P168581 DDX60L
GH04F168557 1.4 FANTOM5 Ensembl ENCODE 10.1 +126.3 126253 5.8 PKNOX1 INSM2 SIN3A ZNF366 HSF1 SCRT2 RCOR1 FOS ZNF362 CEBPB DDX60L RNU6-1336P PALLD ENSG00000249623 DDX60 GC04P168581
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1336P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1336P Gene

Chromosome:
4
Start:
168,686,608 bp from pter
End:
168,686,716 bp from pter
Size:
109 bases
Orientation:
Minus strand

Genomic View for RNU6-1336P Gene

Genes around RNU6-1336P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1336P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1336P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1336P Gene

ORGUL Member Location for RNU6-1336P Gene

ORGUL Member Location for RNU6-1336P gene

Proteins for RNU6-1336P Gene

Post-translational modifications for RNU6-1336P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1336P Gene

Domains & Families for RNU6-1336P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1336P Gene

Function for RNU6-1336P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1336P Gene

Localization for RNU6-1336P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1336P Gene

Pathways & Interactions for RNU6-1336P Gene

SuperPathways for RNU6-1336P Gene

No Data Available

Interacting Proteins for RNU6-1336P Gene

Gene Ontology (GO) - Biological Process for RNU6-1336P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1336P Gene

Transcripts for RNU6-1336P Gene

mRNA/cDNA for RNU6-1336P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1336P Gene

No ASD Table

Relevant External Links for RNU6-1336P Gene

GeneLoc Exon Structure for
RNU6-1336P
ECgene alternative splicing isoforms for
RNU6-1336P

Expression for RNU6-1336P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1336P Gene

genes like me logo Genes that share expression patterns with RNU6-1336P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1336P Gene

Orthologs for RNU6-1336P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1336P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25801 35
  • 89 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 85 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U6 35
  • 81 (a)
ManyToMany
Species where no ortholog for RNU6-1336P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1336P Gene

ENSEMBL:
Gene Tree for RNU6-1336P (if available)
TreeFam:
Gene Tree for RNU6-1336P (if available)

Paralogs for RNU6-1336P Gene

No data available for Paralogs for RNU6-1336P Gene

Variants for RNU6-1336P Gene

Relevant External Links for RNU6-1336P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1336P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1336P Gene

Disorders for RNU6-1336P Gene

No disorders were found for RNU6-1336P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1336P Gene

Publications for RNU6-1336P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for RNU6-1336P Gene

Sources for RNU6-1336P Gene

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