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Aliases for RNU6-1309P Gene

Subcategory (RNA class) for RNU6-1309P Gene

snRNA

Aliases for RNU6-1309P Gene

  • RNA, U6 Small Nuclear 1309, Pseudogene 2 3 5

External Ids for RNU6-1309P Gene

ORGUL Members for RNU6-1309P Gene

Previous GeneCards Identifiers for RNU6-1309P Gene

  • GC00U935455

Summaries for RNU6-1309P Gene

GeneCards Summary for RNU6-1309P Gene

RNU6-1309P (RNA, U6 Small Nuclear 1309, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1309P Gene

Genomics for RNU6-1309P Gene

Regulatory Elements for RNU6-1309P Gene

Enhancers for RNU6-1309P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F150836 0.2 ENCODE 11.9 -23.6 -23602 0.1 ZNF600 PRDM1 RNU6-1309P CTSK ARNT RPS27AP6 UBE2D3P3 GC01M150812
GH01F150777 0.7 Ensembl 11.5 +34.9 34898 0.4 UBE2D3P3 CTSK RNU6-1309P HORMAD1 PRUNE1 RNU6-884P LOC100132571 GC01P150780 CTSS
GH01F150759 0.7 Ensembl 11.5 +52.8 52798 0.2 UBE2D3P3 CTSK RNU6-1309P HORMAD1 RNU6-1042P GOLPH3L ARNT RPS27AP6 PRUNE1 RNU6-884P
GH01F150775 0.4 Ensembl 11.4 +37.3 37298 0.8 EGR2 UBE2D3P3 CTSK RNU6-1309P HORMAD1 LOC100132571 GC01P150780 CTSS
GH01F150906 0.8 ENCODE 10.7 -93.8 -93842 0.2 ZNF133 MNT DPF2 RAD21 ZNF592 ZNF217 CTBP1 CBX1 GATA3 RCOR1 RPS27AP6 ARNT CERS2 ENSG00000231073 RNU6-1309P CTSK UBE2D3P3 HORMAD1 BNIPL C1orf56
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6-1309P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1309P Gene

Chromosome:
1
Start:
150,812,591 bp from pter
End:
150,812,698 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for RNU6-1309P Gene

Genes around RNU6-1309P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1309P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1309P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1309P Gene

Proteins for RNU6-1309P Gene

Post-translational modifications for RNU6-1309P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1309P Gene

Domains & Families for RNU6-1309P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1309P Gene

Function for RNU6-1309P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1309P Gene

Localization for RNU6-1309P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1309P Gene

Pathways & Interactions for RNU6-1309P Gene

SuperPathways for RNU6-1309P Gene

No Data Available

Interacting Proteins for RNU6-1309P Gene

Gene Ontology (GO) - Biological Process for RNU6-1309P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1309P Gene

Transcripts for RNU6-1309P Gene

mRNA/cDNA for RNU6-1309P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1309P Gene

No ASD Table

Relevant External Links for RNU6-1309P Gene

GeneLoc Exon Structure for
RNU6-1309P
ECgene alternative splicing isoforms for
RNU6-1309P

Expression for RNU6-1309P Gene

mRNA expression in normal human tissues for RNU6-1309P Gene

genes like me logo Genes that share expression patterns with RNU6-1309P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1309P Gene

Orthologs for RNU6-1309P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1309P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35 35 35
  • 89 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 35 35 35
  • 84 (a)
OneToMany
Species where no ortholog for RNU6-1309P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1309P Gene

ENSEMBL:
Gene Tree for RNU6-1309P (if available)
TreeFam:
Gene Tree for RNU6-1309P (if available)

Paralogs for RNU6-1309P Gene

No data available for Paralogs for RNU6-1309P Gene

Variants for RNU6-1309P Gene

Relevant External Links for RNU6-1309P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1309P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1309P Gene

Disorders for RNU6-1309P Gene

No disorders were found for RNU6-1309P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1309P Gene

Publications for RNU6-1309P Gene

No publications were found for RNU6-1309P Gene.

Products for RNU6-1309P Gene

Sources for RNU6-1309P Gene

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