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Aliases for RNU6-1276P Gene

Subcategory (RNA class) for RNU6-1276P Gene

snRNA

Aliases for RNU6-1276P Gene

  • RNA, U6 Small Nuclear 1276, Pseudogene 2 3 5

External Ids for RNU6-1276P Gene

ORGUL Members for RNU6-1276P Gene

Previous GeneCards Identifiers for RNU6-1276P Gene

  • GC08P027639
  • GC00U936054

Summaries for RNU6-1276P Gene

GeneCards Summary for RNU6-1276P Gene

RNU6-1276P (RNA, U6 Small Nuclear 1276, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1276P Gene

Genomics for RNU6-1276P Gene

Regulatory Elements for RNU6-1276P Gene

Enhancers for RNU6-1276P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F027355 1.8 FANTOM5 Ensembl ENCODE 9.9 -404.5 -404548 27.4 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ARID4B YY1 CBX5 ZNF143 PTK2B CLU MIR6843 CCDC25 ESCO2 RNU6-1276P ADRA1A EPHX2 MIR6842
GH08F027383 1.4 FANTOM5 Ensembl ENCODE 9.9 -384.0 -384015 12.7 CTCF PKNOX1 WRNIP1 JUN RAD21 RELA ZNF664 ZFHX2 POLR2A SCRT2 EPHX2 PTK2B CHRNA2 CCDC25 ESCO2 RNU6-1276P MIR6842
GH08F027727 1.2 Ensembl ENCODE 10.7 -46.3 -46336 0.6 ARID4B DMAP1 ZNF48 YY1 ZNF143 MIER2 REST PPARG KAT8 NFIL3 CCDC25 CLU MIR6843 ESCO2 RNU6-1276P ENSG00000253875 MIR3622B
GH08F027602 1.1 ENCODE 9.8 -170.3 -170258 2.5 MLX ARID4B FEZF1 ZNF2 YY1 ZNF302 ZNF143 SP5 NFYC MXD4 LOC100130612 LOC100132229 ENSG00000253875 EPHX2 CHRNA2 CCDC25 ESCO2 RNU6-1276P GULOP CLU
GH08F027607 0.8 ENCODE 9.8 -165.1 -165062 1.6 CTCF MAX KLF17 ZIC2 RAD21 YY1 ZNF335 ZNF316 POLR2A ZNF239 RNU6-1276P CCDC25 ESCO2 CLU MIR6843 GULOP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1276P on UCSC Golden Path with GeneCards custom track

Promoters for RNU6-1276P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001388542 955 2401 HDGF MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS
ENSR00001899735 -1145 1401 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 NFYC

Genomic Location for RNU6-1276P Gene

Chromosome:
8
Start:
27,773,645 bp from pter
End:
27,773,748 bp from pter
Size:
104 bases
Orientation:
Plus strand

Genomic View for RNU6-1276P Gene

Genes around RNU6-1276P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1276P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1276P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1276P Gene

Proteins for RNU6-1276P Gene

Post-translational modifications for RNU6-1276P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1276P Gene

Domains & Families for RNU6-1276P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1276P Gene

Function for RNU6-1276P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1276P Gene

Localization for RNU6-1276P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1276P Gene

Pathways & Interactions for RNU6-1276P Gene

SuperPathways for RNU6-1276P Gene

No Data Available

Interacting Proteins for RNU6-1276P Gene

Gene Ontology (GO) - Biological Process for RNU6-1276P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1276P Gene

Transcripts for RNU6-1276P Gene

mRNA/cDNA for RNU6-1276P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1276P Gene

No ASD Table

Relevant External Links for RNU6-1276P Gene

GeneLoc Exon Structure for
RNU6-1276P
ECgene alternative splicing isoforms for
RNU6-1276P

Expression for RNU6-1276P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1276P Gene

genes like me logo Genes that share expression patterns with RNU6-1276P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1276P Gene

Orthologs for RNU6-1276P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1276P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25006 35
  • 76 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 71 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 69 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 68 (a)
ManyToMany
Species where no ortholog for RNU6-1276P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1276P Gene

ENSEMBL:
Gene Tree for RNU6-1276P (if available)
TreeFam:
Gene Tree for RNU6-1276P (if available)

Paralogs for RNU6-1276P Gene

No data available for Paralogs for RNU6-1276P Gene

Variants for RNU6-1276P Gene

Relevant External Links for RNU6-1276P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1276P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1276P Gene

Disorders for RNU6-1276P Gene

No disorders were found for RNU6-1276P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1276P Gene

Publications for RNU6-1276P Gene

No publications were found for RNU6-1276P Gene.

Products for RNU6-1276P Gene

Sources for RNU6-1276P Gene

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