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Aliases for RNU6-1262P Gene

Aliases for RNU6-1262P Gene

  • RNA, U6 Small Nuclear 1262, Pseudogene 2 3 5

External Ids for RNU6-1262P Gene

Previous GeneCards Identifiers for RNU6-1262P Gene

  • GC16M068321
  • GC00U934577

Summaries for RNU6-1262P Gene

GeneCards Summary for RNU6-1262P Gene

RNU6-1262P (RNA, U6 Small Nuclear 1262, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1262P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1262P Gene

Genomics for RNU6-1262P Gene

Regulatory Elements for RNU6-1262P Gene

Enhancers for RNU6-1262P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H068355 1.3 Ensembl ENCODE dbSUPER 12.2 -72.3 -72255 1 CTCF TBL1XR1 MAX RELA POLR2A EED ZNF143 SMC3 ATF7 ETV6 PRMT7 SLC7A6 RNU6-1262P SLC7A6OS ENSG00000212445 DUS2 ENSG00000279693 RNU4-30P
GH16H068358 0.4 dbSUPER 12.2 -75.1 -75086 1 POLR2A PRMT7 RNU6-1262P SLC7A6 SLC7A6OS ENSG00000212445 ENSG00000279693 RNU4-30P
GH16H068279 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.1 -2143 13 HDGF PKNOX1 FOXA2 MLX SIN3A ARID4B DMAP1 SLC30A9 ZNF766 FOS PRMT7 SLC7A6 NFATC3 SLC7A6OS RNU4-30P DUS2 RANBP10 DPEP2 PSMB10 LRRC36
GH16H068267 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.7 11747 10 PKNOX1 FOXA2 SIN3A ARID4B ZNF121 FOS ATF7 RUNX3 SP3 JUNB SLC7A6 PRMT7 ZFP90 ACD ENKD1 ZDHHC1 C16orf86 DPEP2 NFATC3 THAP11
GH16H068263 1.4 ENCODE dbSUPER 0.4 +19.3 19326 3 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 PRMT7 ZFP90 CTCF SNTB2 ZDHHC1 SLC12A4 SLC7A6 LOC100131303 RNU4-36P ENSG00000265113
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1262P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1262P Gene

Chromosome:
16
Start:
68,284,223 bp from pter
End:
68,284,318 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for RNU6-1262P Gene

Genes around RNU6-1262P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1262P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1262P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1262P Gene

Proteins for RNU6-1262P Gene

Post-translational modifications for RNU6-1262P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1262P Gene

Domains & Families for RNU6-1262P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1262P Gene

Function for RNU6-1262P Gene

Phenotypes From GWAS Catalog for RNU6-1262P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1262P Gene

Localization for RNU6-1262P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1262P Gene

Pathways & Interactions for RNU6-1262P Gene

SuperPathways for RNU6-1262P Gene

No Data Available

Interacting Proteins for RNU6-1262P Gene

Gene Ontology (GO) - Biological Process for RNU6-1262P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1262P Gene

Drugs & Compounds for RNU6-1262P Gene

No Compound Related Data Available

Transcripts for RNU6-1262P Gene

mRNA/cDNA for RNU6-1262P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1262P Gene

No ASD Table

Relevant External Links for RNU6-1262P Gene

GeneLoc Exon Structure for
RNU6-1262P
ECgene alternative splicing isoforms for
RNU6-1262P

Expression for RNU6-1262P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1262P Gene

genes like me logo Genes that share expression patterns with RNU6-1262P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1262P Gene

Orthologs for RNU6-1262P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1262P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34 34 34 34 34 34
  • 67 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25805 34
  • 63 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 64 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 34
  • 87 (a)
ManyToMany
Species where no ortholog for RNU6-1262P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1262P Gene

ENSEMBL:
Gene Tree for RNU6-1262P (if available)
TreeFam:
Gene Tree for RNU6-1262P (if available)

Paralogs for RNU6-1262P Gene

No data available for Paralogs for RNU6-1262P Gene

Variants for RNU6-1262P Gene

Relevant External Links for RNU6-1262P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1262P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1262P Gene

Disorders for RNU6-1262P Gene

No disorders were found for RNU6-1262P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1262P Gene

Publications for RNU6-1262P Gene

No publications were found for RNU6-1262P Gene.

Products for RNU6-1262P Gene

Sources for RNU6-1262P Gene

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