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Aliases for RNU6-1251P Gene

Subcategory (RNA class) for RNU6-1251P Gene

snRNA

Aliases for RNU6-1251P Gene

  • RNA, U6 Small Nuclear 1251, Pseudogene 2 3 5

External Ids for RNU6-1251P Gene

ORGUL Members for RNU6-1251P Gene

Previous GeneCards Identifiers for RNU6-1251P Gene

  • GC20P042103
  • GC00U935815

Summaries for RNU6-1251P Gene

GeneCards Summary for RNU6-1251P Gene

RNU6-1251P (RNA, U6 Small Nuclear 1251, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1251P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1251P Gene

Genomics for RNU6-1251P Gene

Regulatory Elements for RNU6-1251P Gene

Enhancers for RNU6-1251P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H043555 1.6 FANTOM5 Ensembl ENCODE 10.2 +85.6 85602 6 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF207 ZNF143 IFT52 SRSF6 RNU6-1251P SGK2 ENSG00000226143
GH20H043513 1 ENCODE 11.7 +41.5 41459 2 HDGF PKNOX1 ARID4B DMAP1 ZNF2 YY1 ZNF121 GLIS2 ZNF143 ATF7 RNU6-1251P ENSG00000226143 IFT52 SGK2 ENSG00000234271 L3MBTL1
GH20H043530 1 ENCODE 11.1 +58.0 57956 1 MLX ARID4B DMAP1 SLC30A9 SP5 ZHX2 MXD4 NFYC MIER2 PPARG SGK2 RNU6-1251P L3MBTL1 GC20M043507 ENSG00000277611
GH20H043449 0.8 ENCODE 11.5 -23.9 -23878 0 HDGF FOXA2 ARID4B RAD21 RFX5 ZNF143 CREM MIXL1 THAP11 ZNF654 RNU6-1251P GC20M043452 ENSG00000206998 EIF4EBP2P1
GH20H043515 0.4 ENCODE 11.7 +42.9 42933 0 TAL1 ZNF592 RNU6-1251P ENSG00000226143 IFT52 SGK2 ENSG00000234271 L3MBTL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1251P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1251P Gene

Chromosome:
20
Start:
43,473,013 bp from pter
End:
43,473,119 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1251P Gene

Genes around RNU6-1251P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1251P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1251P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1251P Gene

Proteins for RNU6-1251P Gene

Post-translational modifications for RNU6-1251P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1251P Gene

Domains & Families for RNU6-1251P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1251P Gene

Function for RNU6-1251P Gene

Phenotypes From GWAS Catalog for RNU6-1251P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1251P Gene

Localization for RNU6-1251P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1251P Gene

Pathways & Interactions for RNU6-1251P Gene

SuperPathways for RNU6-1251P Gene

No Data Available

Interacting Proteins for RNU6-1251P Gene

Gene Ontology (GO) - Biological Process for RNU6-1251P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1251P Gene

Drugs & Compounds for RNU6-1251P Gene

No Compound Related Data Available

Transcripts for RNU6-1251P Gene

mRNA/cDNA for RNU6-1251P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1251P Gene

No ASD Table

Relevant External Links for RNU6-1251P Gene

GeneLoc Exon Structure for
RNU6-1251P
ECgene alternative splicing isoforms for
RNU6-1251P

Expression for RNU6-1251P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1251P Gene

genes like me logo Genes that share expression patterns with RNU6-1251P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1251P Gene

Orthologs for RNU6-1251P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1251P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 89 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26497 34
  • 89 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 88 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34 34
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34 34
  • 77 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 86 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U6 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 83 (a)
ManyToMany
Species where no ortholog for RNU6-1251P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-1251P Gene

ENSEMBL:
Gene Tree for RNU6-1251P (if available)
TreeFam:
Gene Tree for RNU6-1251P (if available)

Paralogs for RNU6-1251P Gene

No data available for Paralogs for RNU6-1251P Gene

Variants for RNU6-1251P Gene

Relevant External Links for RNU6-1251P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1251P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1251P Gene

Disorders for RNU6-1251P Gene

No disorders were found for RNU6-1251P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1251P Gene

Publications for RNU6-1251P Gene

No publications were found for RNU6-1251P Gene.

Products for RNU6-1251P Gene

Sources for RNU6-1251P Gene

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