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Aliases for RNU6-1238P Gene

Subcategory (RNA class) for RNU6-1238P Gene

snRNA

Aliases for RNU6-1238P Gene

  • RNA, U6 Small Nuclear 1238, Pseudogene 2 3 5

External Ids for RNU6-1238P Gene

ORGUL Members for RNU6-1238P Gene

Previous GeneCards Identifiers for RNU6-1238P Gene

  • GC11M067164
  • GC00U935964

Summaries for RNU6-1238P Gene

GeneCards Summary for RNU6-1238P Gene

RNU6-1238P (RNA, U6 Small Nuclear 1238, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1238P Gene

Genomics for RNU6-1238P Gene

Regulatory Elements for RNU6-1238P Gene

Enhancers for RNU6-1238P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F067347 1.1 Ensembl ENCODE 11.7 +46.2 46211 2.6 PKNOX1 ARNT CREB3L1 ARID4B ZNF48 YY1 ELK1 GATA2 JUNB NCOA1 ENSG00000258297 ENSG00000256514 CLCF1 RBM4B RAD9A RNU6-1238P TBC1D10C SSH3 CARNS1 PPP1CA
GH11F067316 0.5 ENCODE 11.7 +77.7 77741 2.3 HDGF CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 ZNF263 CLCF1 MRPL11 LRP5 RHOD GRK2 SSH3 POLD4 RN7SKP239 ENSG00000256514 RNU6-1238P
GH11F067344 0.5 Ensembl ENCODE 11.3 +49.6 49560 3.1 PKNOX1 SIN3A ZBTB40 ZNF2 RAD21 ELK1 ZNF366 ZNF143 RCOR1 FOS RBM4B CLCF1 ENSG00000256514 SSH3 ANKRD13D RAD9A PPP1CA RNU6-1238P TBC1D10C CARNS1
GH11F067399 0.6 ENCODE 0.8 -3.8 -3834 0.2 POLR2A RNU6-1238P TBC1D10C
GH11F067396 0.6 ENCODE 0.8 -1.7 -1737 1.8 PKNOX1 RFX1 MAFF ZNF316 POLR2A KDM1A MAFK EMSY SSH3 PTPRCAP C11orf80 RNU6-1238P TBC1D10C
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6-1238P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1238P Gene

Chromosome:
11
Start:
67,395,210 bp from pter
End:
67,395,311 bp from pter
Size:
102 bases
Orientation:
Minus strand

Genomic View for RNU6-1238P Gene

Genes around RNU6-1238P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1238P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1238P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1238P Gene

Proteins for RNU6-1238P Gene

Post-translational modifications for RNU6-1238P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1238P Gene

Domains & Families for RNU6-1238P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1238P Gene

Function for RNU6-1238P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1238P Gene

Localization for RNU6-1238P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1238P Gene

Pathways & Interactions for RNU6-1238P Gene

SuperPathways for RNU6-1238P Gene

No Data Available

Interacting Proteins for RNU6-1238P Gene

Gene Ontology (GO) - Biological Process for RNU6-1238P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1238P Gene

Transcripts for RNU6-1238P Gene

mRNA/cDNA for RNU6-1238P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1238P Gene

No ASD Table

Relevant External Links for RNU6-1238P Gene

GeneLoc Exon Structure for
RNU6-1238P
ECgene alternative splicing isoforms for
RNU6-1238P

Expression for RNU6-1238P Gene

mRNA expression in normal human tissues for RNU6-1238P Gene

genes like me logo Genes that share expression patterns with RNU6-1238P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1238P Gene

Orthologs for RNU6-1238P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1238P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 60 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 54 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 53 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22208 35
  • 49 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6 35
  • 72 (a)
ManyToMany
Species where no ortholog for RNU6-1238P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-1238P Gene

ENSEMBL:
Gene Tree for RNU6-1238P (if available)
TreeFam:
Gene Tree for RNU6-1238P (if available)

Paralogs for RNU6-1238P Gene

No data available for Paralogs for RNU6-1238P Gene

Variants for RNU6-1238P Gene

Relevant External Links for RNU6-1238P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1238P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1238P Gene

Disorders for RNU6-1238P Gene

No disorders were found for RNU6-1238P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1238P Gene

Publications for RNU6-1238P Gene

No publications were found for RNU6-1238P Gene.

Products for RNU6-1238P Gene

Sources for RNU6-1238P Gene

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