Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1227P Gene

Subcategory (RNA class) for RNU6-1227P Gene

snRNA

Aliases for RNU6-1227P Gene

  • RNA, U6 Small Nuclear 1227, Pseudogene 2 3 5

External Ids for RNU6-1227P Gene

ORGUL Members for RNU6-1227P Gene

Previous GeneCards Identifiers for RNU6-1227P Gene

  • GC00U935402

Summaries for RNU6-1227P Gene

GeneCards Summary for RNU6-1227P Gene

RNU6-1227P (RNA, U6 Small Nuclear 1227, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1227P Gene

Genomics for RNU6-1227P Gene

Regulatory Elements for RNU6-1227P Gene

Enhancers for RNU6-1227P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G038722 1.5 VISTA ENCODE 10.1 -301.5 -301461 4.8 PKNOX1 ATF1 ARNT SIN3A TCF12 ZNF766 ELK1 GATA2 FOS KDM4B ENSG00000231243 RNU6-1227P SCN10A SCN5A
GH03G039276 1.5 Ensembl ENCODE dbSUPER 8.9 +251.8 251814 2.8 HNRNPUL1 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 GATA2 SP5 XIRP1 GORASP1 TTC21A CCR8 HNRNPA1P21 RNU6-1227P RPSA CX3CR1 LOC102724104
GH03G039260 1.4 Ensembl ENCODE dbSUPER 9.2 +236.5 236545 4.9 ATF1 FOS JUNB TBX21 MEF2D MAFF CBX8 SMARCA4 STAT3 WT1 GORASP1 SNORA62 CSRNP1 XIRP1 TTC21A RNU6-1227P RPSA CX3CR1 EXOG LOC102724104
GH03G039271 1.4 FANTOM5 Ensembl ENCODE dbSUPER 8.7 +246.7 246727 3.4 CTCF CBX3 JUNB FOSL1 CBX1 JUND CBX5 ATF3 IKZF1 FOS XIRP1 TTC21A GORASP1 CCR8 HNRNPA1P21 RNU6-1227P RPSA CSRNP1 SCN10A WDR48
GH03G039065 1 Ensembl ENCODE 11.1 +39.3 39334 0.2 CTCF ZNF777 CBX3 SIN3A RBBP5 RAD21 ZNF48 ZNF2 YY1 GLIS2 RNU6-1227P CX3CR1 WDR48 GC03M039097 PIR55888
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1227P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1227P Gene

Chromosome:
3
Start:
39,025,987 bp from pter
End:
39,026,093 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1227P Gene

Genes around RNU6-1227P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1227P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1227P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1227P Gene

Proteins for RNU6-1227P Gene

Post-translational modifications for RNU6-1227P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1227P Gene

Domains & Families for RNU6-1227P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1227P Gene

Function for RNU6-1227P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1227P Gene

Localization for RNU6-1227P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1227P Gene

Pathways & Interactions for RNU6-1227P Gene

SuperPathways for RNU6-1227P Gene

No Data Available

Interacting Proteins for RNU6-1227P Gene

Gene Ontology (GO) - Biological Process for RNU6-1227P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1227P Gene

Drugs & Compounds for RNU6-1227P Gene

No Compound Related Data Available

Transcripts for RNU6-1227P Gene

mRNA/cDNA for RNU6-1227P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1227P Gene

No ASD Table

Relevant External Links for RNU6-1227P Gene

GeneLoc Exon Structure for
RNU6-1227P
ECgene alternative splicing isoforms for
RNU6-1227P

Expression for RNU6-1227P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1227P Gene

genes like me logo Genes that share expression patterns with RNU6-1227P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1227P Gene

Orthologs for RNU6-1227P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1227P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25929 35
  • 89 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 86 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 80 (a)
ManyToMany
Species where no ortholog for RNU6-1227P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1227P Gene

ENSEMBL:
Gene Tree for RNU6-1227P (if available)
TreeFam:
Gene Tree for RNU6-1227P (if available)

Paralogs for RNU6-1227P Gene

No data available for Paralogs for RNU6-1227P Gene

Variants for RNU6-1227P Gene

Relevant External Links for RNU6-1227P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1227P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1227P Gene

Disorders for RNU6-1227P Gene

No disorders were found for RNU6-1227P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1227P Gene

Publications for RNU6-1227P Gene

No publications were found for RNU6-1227P Gene.

Products for RNU6-1227P Gene

Sources for RNU6-1227P Gene

Content
Loading form....