Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1201P Gene

Subcategory (RNA class) for RNU6-1201P Gene

snRNA

Aliases for RNU6-1201P Gene

  • RNA, U6 Small Nuclear 1201, Pseudogene 2 3 5

External Ids for RNU6-1201P Gene

ORGUL Members for RNU6-1201P Gene

Previous GeneCards Identifiers for RNU6-1201P Gene

  • GC17M046169
  • GC00U935530

Summaries for RNU6-1201P Gene

GeneCards Summary for RNU6-1201P Gene

RNU6-1201P (RNA, U6 Small Nuclear 1201, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1201P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1201P Gene

Genomics for RNU6-1201P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1201P Gene

Promoters and enhancers for RNU6-1201P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048044 Promoter/Enhancer 2.5 VISTA EPDnew Ensembl ENCODE dbSUPER 11.3 +37.7 37677 13 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC NFE2L1 SP2 SNX11 ENSG00000266601 KPNB1 MRPL45P2 CBX1 UBE2Z ENSG00000253347 EFCAB13
GH17I048011 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +75.4 75353 4.3 HDGF PKNOX1 CLOCK ARNT SIN3A ZNF2 ZBTB7B E2F8 ZNF207 ZNF143 SP2 MRPL45P2 SCRN2 PRR15L ENSG00000264701 UBE2Z EFCAB13 RPS2P47 COPZ2 CDK5RAP3
GH17I048110 Enhancer 0.8 ENCODE 12.3 -23.6 -23587 3.3 HDGF SMAD1 KLF5 ZNF121 ZNF143 ATF7 BCLAF1 IKZF2 RUNX3 EGR2 SNX11 COPZ2 PRR15L CDK5RAP3 RNU6-1201P MIR152 NFE2L1 MIR1203 HOXB9 HOXB-AS4
GH17I048127 Enhancer 0.7 ENCODE 11.8 -38.8 -38790 0.2 PKNOX1 JUN SIN3A CTBP1 POLR2A RCOR1 FOS FOSL2 SMARCC1 ZNF687 GC17P048126 GC17P048129 RNU6-1201P SNX11 CBX1 MIR1203 COPZ2 MIR152 NFE2L1 HOXB9
GH17I048131 Enhancer 0.7 ENCODE 11.8 -42.6 -42630 0.2 CTCF RB1 ARID4B THRB RAD21 RFX5 CC2D1A ZFHX2 CTBP1 ARID2 GC17P048132 GC17P048129 RNU6-1201P CBX1 SNX11 MIR1203 COPZ2 MIR152 NFE2L1 HOXB-AS4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1201P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1201P Gene

Genomic Locations for RNU6-1201P Gene
chr17:48,088,678-48,088,784
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-1201P Gene

Genes around RNU6-1201P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1201P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1201P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1201P Gene

Proteins for RNU6-1201P Gene

Post-translational modifications for RNU6-1201P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1201P Gene

Domains & Families for RNU6-1201P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1201P Gene

Function for RNU6-1201P Gene

Phenotypes From GWAS Catalog for RNU6-1201P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1201P Gene

Localization for RNU6-1201P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1201P Gene

Pathways & Interactions for RNU6-1201P Gene

SuperPathways for RNU6-1201P Gene

No Data Available

Interacting Proteins for RNU6-1201P Gene

Gene Ontology (GO) - Biological Process for RNU6-1201P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1201P Gene

Drugs & Compounds for RNU6-1201P Gene

No Compound Related Data Available

Transcripts for RNU6-1201P Gene

mRNA/cDNA for RNU6-1201P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1201P Gene

No ASD Table

Relevant External Links for RNU6-1201P Gene

GeneLoc Exon Structure for
RNU6-1201P
ECgene alternative splicing isoforms for
RNU6-1201P

Expression for RNU6-1201P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1201P Gene

genes like me logo Genes that share expression patterns with RNU6-1201P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1201P Gene

Orthologs for RNU6-1201P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1201P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm24121 34
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 89 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 86 (a)
OneToMany
Species where no ortholog for RNU6-1201P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1201P Gene

ENSEMBL:
Gene Tree for RNU6-1201P (if available)
TreeFam:
Gene Tree for RNU6-1201P (if available)

Paralogs for RNU6-1201P Gene

No data available for Paralogs for RNU6-1201P Gene

Variants for RNU6-1201P Gene

Additional Variant Information for RNU6-1201P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1201P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1201P Gene

Disorders for RNU6-1201P Gene

No disorders were found for RNU6-1201P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1201P Gene

Publications for RNU6-1201P Gene

No publications were found for RNU6-1201P Gene.

Products for RNU6-1201P Gene

Sources for RNU6-1201P Gene

Content
Loading form....