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Aliases for RNU6-1198P Gene

Aliases for RNU6-1198P Gene

  • RNA, U6 Small Nuclear 1198, Pseudogene 2 3 5

External Ids for RNU6-1198P Gene

Previous GeneCards Identifiers for RNU6-1198P Gene

  • GC07P072922
  • GC00U934615

Summaries for RNU6-1198P Gene

GeneCards Summary for RNU6-1198P Gene

RNU6-1198P (RNA, U6 Small Nuclear 1198, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1198P Gene

Genomics for RNU6-1198P Gene

Regulatory Elements for RNU6-1198P Gene

Enhancers for RNU6-1198P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F073612 1.4 Ensembl ENCODE 11 +106.3 106279 2.6 PKNOX1 ARNT MLX ARID4B SIN3A FEZF1 DMAP1 YY1 PAF1 ZNF263 WBSCR22 MIR590 POM121 POM121B BCL7B STX1A GTF2IRD2P1 VPS37D DNAJC30 TBL2
GH07F073435 1.1 Ensembl ENCODE 11.6 -69.9 -69858 4.7 CTCF TFAP4 ZIC2 RAD21 RFX5 HIC1 ZNF121 ZFHX2 GLIS2 POLR2A ENSG00000202035 RNU6-1198P RNU6-1080P MLXIPL BCL7B POM121B NSUN5P2 FZD9 GC07P073471
GH07F073606 1 Ensembl ENCODE 10.6 +100.1 100090 1.2 CTCF ZNF654 ZMYM3 TRIM22 REST ZBTB7A RAD21 TFDP1 JUND ZBTB48 STX1A VPS37D DNAJC30 WBSCR22 TBL2 MLXIPL RNU6-1198P GTF2IP4 ENSG00000274080 GC07P073590
GH07F073345 0.7 Ensembl 10.5 -161.3 -161308 0.2 SOX13 GATAD2A SOX5 TFAP4 ARID4B CEBPB SCRT2 NR2F6 ZNF652 MIXL1 RNU6-1198P DNAJC30 WBSCR22 POM121B GC07M073340 RNU6-1080P GC07M073332
GH07F073451 0.6 ENCODE 12.2 -55.2 -55223 0.2 CTCF ZNF654 TRIM22 REST RAD21 KLF16 SMC3 ZNF143 THAP11 ENSG00000202035 RNU6-1198P RNU6-1080P GC07P073471 FZD9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1198P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1198P Gene

Chromosome:
7
Start:
73,507,208 bp from pter
End:
73,507,274 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for RNU6-1198P Gene

Genes around RNU6-1198P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1198P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1198P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1198P Gene

Proteins for RNU6-1198P Gene

Post-translational modifications for RNU6-1198P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1198P Gene

Domains & Families for RNU6-1198P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1198P Gene

Function for RNU6-1198P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1198P Gene

Localization for RNU6-1198P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1198P Gene

Pathways & Interactions for RNU6-1198P Gene

SuperPathways for RNU6-1198P Gene

No Data Available

Interacting Proteins for RNU6-1198P Gene

Gene Ontology (GO) - Biological Process for RNU6-1198P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1198P Gene

Transcripts for RNU6-1198P Gene

mRNA/cDNA for RNU6-1198P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1198P Gene

No ASD Table

Relevant External Links for RNU6-1198P Gene

GeneLoc Exon Structure for
RNU6-1198P
ECgene alternative splicing isoforms for
RNU6-1198P

Expression for RNU6-1198P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1198P Gene

Orthologs for RNU6-1198P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1198P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 48 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23025 35
  • 42 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 40 (a)
OneToOne
Species where no ortholog for RNU6-1198P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1198P Gene

ENSEMBL:
Gene Tree for RNU6-1198P (if available)
TreeFam:
Gene Tree for RNU6-1198P (if available)

Paralogs for RNU6-1198P Gene

No data available for Paralogs for RNU6-1198P Gene

Variants for RNU6-1198P Gene

Relevant External Links for RNU6-1198P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1198P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1198P Gene

Disorders for RNU6-1198P Gene

No disorders were found for RNU6-1198P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1198P Gene

Publications for RNU6-1198P Gene

No publications were found for RNU6-1198P Gene.

Products for RNU6-1198P Gene

Sources for RNU6-1198P Gene

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