Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1123P Gene

Subcategory (RNA class) for RNU6-1123P Gene

snRNA

Aliases for RNU6-1123P Gene

  • RNA, U6 Small Nuclear 1123, Pseudogene 2 3 5

External Ids for RNU6-1123P Gene

ORGUL Members for RNU6-1123P Gene

Previous GeneCards Identifiers for RNU6-1123P Gene

  • GC11P119529
  • GC00U935534

Summaries for RNU6-1123P Gene

GeneCards Summary for RNU6-1123P Gene

RNU6-1123P (RNA, U6 Small Nuclear 1123, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1123P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1123P Gene

Genomics for RNU6-1123P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1123P Gene

Promoters and enhancers for RNU6-1123P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I119594 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.8 -61.3 -61325 1.4 HDGF PKNOX1 ATF1 TCF12 ZNF766 CBX5 FOS ATF7 CAVIN1 NCOA1 RNU6-1123P CBL KRT8P7 PIR32447
GH11I119615 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 -40.3 -40273 2.1 ELF3 FOXA2 THRB RARA ATF7 FOS IKZF2 ELF1 KAT8 NFIL3 RNU6-1123P C1QTNF5 LOC105369520 GC11P119657
GH11I120131 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 10.9 +479.0 478974 7.8 ZNF263 CTCF SCRT2 RCOR1 ZNF444 REST TRIM29 RNU6-1123P ENSG00000255216 OAF LOC105369529 ENSG00000176984
GH11I119590 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.8 -65.3 -65285 1.9 PKNOX1 USF1 GTF2E2 ZNF644 FOSL1 ZNF766 GATA3 POLR2A ZNF639 ZNF740 RNU6-1123P CBL PIR32447 KRT8P7
GH11I119902 Enhancer 1 ENCODE dbSUPER 10.8 +250.1 250068 8.3 HDAC1 FOXA2 PKNOX1 BMI1 ZBTB40 RAD21 YY1 ZNF766 RCOR1 EGR2 LOC105369526 RNU6-1123P CBL GC11M119983
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1123P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1123P Gene

Genomic Locations for RNU6-1123P Gene
chr11:119,656,311-119,656,416
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand

Genomic View for RNU6-1123P Gene

Genes around RNU6-1123P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1123P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1123P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1123P Gene

Proteins for RNU6-1123P Gene

Post-translational modifications for RNU6-1123P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1123P Gene

Domains & Families for RNU6-1123P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1123P Gene

Function for RNU6-1123P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1123P Gene

Localization for RNU6-1123P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1123P Gene

Pathways & Interactions for RNU6-1123P Gene

SuperPathways for RNU6-1123P Gene

No Data Available

Interacting Proteins for RNU6-1123P Gene

Gene Ontology (GO) - Biological Process for RNU6-1123P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1123P Gene

Drugs & Compounds for RNU6-1123P Gene

No Compound Related Data Available

Transcripts for RNU6-1123P Gene

mRNA/cDNA for RNU6-1123P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1123P Gene

No ASD Table

Relevant External Links for RNU6-1123P Gene

GeneLoc Exon Structure for
RNU6-1123P
ECgene alternative splicing isoforms for
RNU6-1123P

Expression for RNU6-1123P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1123P Gene

genes like me logo Genes that share expression patterns with RNU6-1123P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1123P Gene

Orthologs for RNU6-1123P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1123P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 82 (a)
OneToOne
Species where no ortholog for RNU6-1123P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1123P Gene

ENSEMBL:
Gene Tree for RNU6-1123P (if available)
TreeFam:
Gene Tree for RNU6-1123P (if available)

Paralogs for RNU6-1123P Gene

No data available for Paralogs for RNU6-1123P Gene

Variants for RNU6-1123P Gene

Additional Variant Information for RNU6-1123P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1123P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1123P Gene

Disorders for RNU6-1123P Gene

No disorders were found for RNU6-1123P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1123P Gene

Publications for RNU6-1123P Gene

No publications were found for RNU6-1123P Gene.

Products for RNU6-1123P Gene

Sources for RNU6-1123P Gene

Content
Loading form....