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Aliases for RNU6-1113P Gene

Subcategory (RNA class) for RNU6-1113P Gene

snRNA

Aliases for RNU6-1113P Gene

  • RNA, U6 Small Nuclear 1113, Pseudogene 2 3 5

External Ids for RNU6-1113P Gene

ORGUL Members for RNU6-1113P Gene

Previous GeneCards Identifiers for RNU6-1113P Gene

  • GC00U935312

Summaries for RNU6-1113P Gene

GeneCards Summary for RNU6-1113P Gene

RNU6-1113P (RNA, U6 Small Nuclear 1113, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1113P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1113P Gene

Genomics for RNU6-1113P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1113P Gene

Promoters and enhancers for RNU6-1113P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I043382 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 -90.3 -90328 2.7 PKNOX1 SMAD1 BMI1 YBX1 BATF KLF5 IRF4 YY1 ATF7 ETV6 GC06P043382 SLC22A7 ABCC10 RPL12P47 CRIP3 DLK2 TTBK1 DNPH1 TJAP1 RNU6-1113P
GH06I043261 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.6 -211.8 -211821 1.4 ELF3 SAP130 CEBPG ZIC2 ZNF644 RAD21 ZNF48 ZSCAN9 RARA TEAD3 DNPH1 SLC22A7 ZNF318 CRIP3 RPL12P47 DLK2 ENSG00000245261 CUL9 YIPF3 LRRC73
GH06I043376 Enhancer 0.9 ENCODE dbSUPER 11 -97.4 -97409 0.9 EBF1 BMI1 BATF IRF4 RELA FOSL1 ETV6 FOS IKZF2 RUNX3 RNU6-1113P TJAP1 DLK2 RPL12P47 CRIP3 LRRC73 POLR1C YIPF3 ZNF318 GC06P043382
GH06I043312 Enhancer 0.7 Ensembl ENCODE 9.9 -161.1 -161104 1 SMARCA5 ZNF217 MEF2D IKZF1 CEBPB NBN CEBPG SLC22A7 TTBK1 DNPH1 DLK2 LRRC73 POLR1C YIPF3 RNU6-1113P TJAP1 ZNF318
GH06I043327 Enhancer 0.5 FANTOM5 10.5 -146.2 -146199 0.3 ATF4 CEBPG PRDM10 RPL34P14 TJAP1 SLC22A7 TTBK1 DNPH1 ZNF318 RNU6-1113P DLK2 POLR1C YIPF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1113P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1113P Gene

Genomic Locations for RNU6-1113P Gene
chr6:43,474,186-43,474,292
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1113P Gene

Genes around RNU6-1113P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1113P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1113P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1113P Gene

Proteins for RNU6-1113P Gene

Post-translational modifications for RNU6-1113P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1113P Gene

Domains & Families for RNU6-1113P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1113P Gene

Function for RNU6-1113P Gene

Phenotypes From GWAS Catalog for RNU6-1113P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1113P Gene

Localization for RNU6-1113P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1113P Gene

Pathways & Interactions for RNU6-1113P Gene

SuperPathways for RNU6-1113P Gene

No Data Available

Interacting Proteins for RNU6-1113P Gene

Gene Ontology (GO) - Biological Process for RNU6-1113P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1113P Gene

Drugs & Compounds for RNU6-1113P Gene

No Compound Related Data Available

Transcripts for RNU6-1113P Gene

mRNA/cDNA for RNU6-1113P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1113P Gene

No ASD Table

Relevant External Links for RNU6-1113P Gene

GeneLoc Exon Structure for
RNU6-1113P
ECgene alternative splicing isoforms for
RNU6-1113P

Expression for RNU6-1113P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1113P Gene

genes like me logo Genes that share expression patterns with RNU6-1113P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1113P Gene

Orthologs for RNU6-1113P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1113P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22057 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 86 (a)
ManyToMany
Species where no ortholog for RNU6-1113P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1113P Gene

ENSEMBL:
Gene Tree for RNU6-1113P (if available)
TreeFam:
Gene Tree for RNU6-1113P (if available)

Paralogs for RNU6-1113P Gene

No data available for Paralogs for RNU6-1113P Gene

Variants for RNU6-1113P Gene

Additional Variant Information for RNU6-1113P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1113P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1113P Gene

Disorders for RNU6-1113P Gene

No disorders were found for RNU6-1113P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1113P Gene

Publications for RNU6-1113P Gene

No publications were found for RNU6-1113P Gene.

Products for RNU6-1113P Gene

Sources for RNU6-1113P Gene

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