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Aliases for RNU6-10P Gene

Subcategory (RNA class) for RNU6-10P Gene

snRNA

Aliases for RNU6-10P Gene

  • RNA, U6 Small Nuclear 10, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 10 2
  • RNU6-10 3

External Ids for RNU6-10P Gene

ORGUL Members for RNU6-10P Gene

Previous HGNC Symbols for RNU6-10P Gene

  • RNU6-10

Previous GeneCards Identifiers for RNU6-10P Gene

  • GC07M092334

Summaries for RNU6-10P Gene

GeneCards Summary for RNU6-10P Gene

RNU6-10P (RNA, U6 Small Nuclear 10, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-10P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-10P Gene

Genomics for RNU6-10P Gene

GeneHancer (GH) Regulatory Elements for RNU6-10P Gene

Promoters and enhancers for RNU6-10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I092812 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.3 -111.8 -111813 2.5 RB1 BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CBFB RNU6-10P FAM133B CYP51A1 LOC101927497 CDK6 GC07M092702
GH07I092678 Enhancer 1.1 ENCODE dbSUPER 13.3 +23.2 23202 1.2 ELF3 FOXA2 ARID4B DMAP1 RAD21 THRB ZNF48 ZSCAN9 RARA CREM RNU6-10P FAM133B GC07M092702 GC07M092611 CDK6
GH07I092693 Enhancer 1.8 UCNEbase Ensembl ENCODE dbSUPER 0.8 +4.9 4895 7.7 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 ETS1 YY1 GATAD1 ENSG00000244055 CDK6 GC07M092702 RNU6-10P GC07M092611
GH07I092702 Enhancer 0.6 dbSUPER 0.8 -4.1 -4131 7 JUNB DPF2 BATF IRF4 ATF2 ZNF507 SSRP1 BCL11A CEBPA IKZF1 CDK6 LOC101927497 KRIT1 GC07M092702 RNU6-10P
GH07I092681 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +18.1 18116 4.9 ELF3 SOX13 FOXA2 SAP130 CEBPG ZNF766 GATA3 CREM GATAD2A SOX5 FAM133B ENSG00000243107 KRIT1 GATAD1 PEX1 AKAP9 CDK6 LOC101927497 MTERF1 ENSG00000244055
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-10P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-10P Gene

Genomic Locations for RNU6-10P Gene
chr7:92,701,708-92,701,814
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand
chr7:92,331,022-92,331,128
(GRCh37/hg19)

Genomic View for RNU6-10P Gene

Genes around RNU6-10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-10P Gene

Proteins for RNU6-10P Gene

Post-translational modifications for RNU6-10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-10P Gene

Domains & Families for RNU6-10P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-10P Gene

Function for RNU6-10P Gene

Phenotypes From GWAS Catalog for RNU6-10P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-10P Gene

Localization for RNU6-10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-10P Gene

Pathways & Interactions for RNU6-10P Gene

SuperPathways for RNU6-10P Gene

No Data Available

Interacting Proteins for RNU6-10P Gene

Gene Ontology (GO) - Biological Process for RNU6-10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-10P Gene

Drugs & Compounds for RNU6-10P Gene

No Compound Related Data Available

Transcripts for RNU6-10P Gene

mRNA/cDNA for RNU6-10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-10P Gene

No ASD Table

Relevant External Links for RNU6-10P Gene

GeneLoc Exon Structure for
RNU6-10P
ECgene alternative splicing isoforms for
RNU6-10P

Expression for RNU6-10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-10P Gene

genes like me logo Genes that share expression patterns with RNU6-10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-10P Gene

Orthologs for RNU6-10P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-10P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 34
  • 98 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 97 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26180 34
  • 96 (a)
ManyToMany
Gm26375 34
  • 84 (a)
ManyToMany
Gm26500 34
  • 84 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 84 (a)
ManyToMany
Species where no ortholog for RNU6-10P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-10P Gene

ENSEMBL:
Gene Tree for RNU6-10P (if available)
TreeFam:
Gene Tree for RNU6-10P (if available)

Paralogs for RNU6-10P Gene

No data available for Paralogs for RNU6-10P Gene

Variants for RNU6-10P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-10P Gene

Variant ID Type Subtype PubMed ID
esv3614148 CNV gain 21293372
nsv831062 CNV gain 17160897

Additional Variant Information for RNU6-10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-10P Gene

Disorders for RNU6-10P Gene

No disorders were found for RNU6-10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-10P Gene

Publications for RNU6-10P Gene

No publications were found for RNU6-10P Gene.

Products for RNU6-10P Gene

Sources for RNU6-10P Gene

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