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Aliases for RNU6-1099P Gene

Subcategory (RNA class) for RNU6-1099P Gene

snRNA

Aliases for RNU6-1099P Gene

  • RNA, U6 Small Nuclear 1099, Pseudogene 2 3 5

External Ids for RNU6-1099P Gene

ORGUL Members for RNU6-1099P Gene

Previous GeneCards Identifiers for RNU6-1099P Gene

  • GC01M019634
  • GC00U935113

Summaries for RNU6-1099P Gene

GeneCards Summary for RNU6-1099P Gene

RNU6-1099P (RNA, U6 Small Nuclear 1099, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1099P Gene

Genomics for RNU6-1099P Gene

Regulatory Elements for RNU6-1099P Gene

Enhancers for RNU6-1099P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G019337 1.5 Ensembl ENCODE dbSUPER 12.8 -33.3 -33339 1.9 ARNT ARID4B DMAP1 YY1 GLIS2 ZNF143 FOS SP3 NFYC ZNF579 PQLC2 AKR7A2 RNU6-1099P RNU4-28P CAPZB PIR41831 GC01M019346
GH01G019404 1.4 Ensembl ENCODE dbSUPER 11.2 -101.3 -101255 3.9 HNRNPUL1 HDAC1 PKNOX1 RB1 TBL1XR1 NFIB ARNT RAD21 TCF12 GATA2 AKR7A2 CAPZB PQLC2 RNU6-1099P NBL1 RNU4-28P EMC1 LOC644083 RN7SL277P
GH01G019368 1.1 ENCODE dbSUPER 11.2 -68.6 -68569 10.5 BCOR CTCF TFAP4 SUZ12 RB1 ZMYM3 ZNF2 RAD21 TEAD3 ZNF121 CAPZB PQLC2 AKR7A2 RNU6-1099P HTR6 RNU4-28P NBL1 GC01P019361 LOC644083
GH01G019271 1 ENCODE dbSUPER 12.3 +31.6 31645 3.4 ZMYM3 MAX RAD21 ZNF507 YY1 GATA2 HNF4G NR2F1 CEBPB ELF1 RNU6-1099P PQLC2 AKR7A2 TAS1R2 MRTO4 AKR7A3 ENSG00000272084 AKR7L GC01M019261
GH01G019362 0.9 ENCODE dbSUPER 11.2 -58.7 -58672 2.4 BCOR ZNF680 ZMYM3 CBX5 HDAC2 RELB HNF4A KDM1A CAPZB PQLC2 AKR7A2 RNU6-1099P RNU4-28P AKR7L GC01P019361 LOC644083
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1099P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1099P Gene

Chromosome:
1
Start:
19,305,076 bp from pter
End:
19,305,182 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-1099P Gene

Genes around RNU6-1099P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1099P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1099P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1099P Gene

Proteins for RNU6-1099P Gene

Post-translational modifications for RNU6-1099P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1099P Gene

Domains & Families for RNU6-1099P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1099P Gene

Function for RNU6-1099P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1099P Gene

Localization for RNU6-1099P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1099P Gene

Pathways & Interactions for RNU6-1099P Gene

SuperPathways for RNU6-1099P Gene

No Data Available

Interacting Proteins for RNU6-1099P Gene

Gene Ontology (GO) - Biological Process for RNU6-1099P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1099P Gene

Transcripts for RNU6-1099P Gene

mRNA/cDNA for RNU6-1099P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1099P Gene

No ASD Table

Relevant External Links for RNU6-1099P Gene

GeneLoc Exon Structure for
RNU6-1099P
ECgene alternative splicing isoforms for
RNU6-1099P

Expression for RNU6-1099P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1099P Gene

genes like me logo Genes that share expression patterns with RNU6-1099P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1099P Gene

Orthologs for RNU6-1099P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1099P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25578 35
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 88 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 73 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 67 (a)
OneToOne
Species where no ortholog for RNU6-1099P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1099P Gene

ENSEMBL:
Gene Tree for RNU6-1099P (if available)
TreeFam:
Gene Tree for RNU6-1099P (if available)

Paralogs for RNU6-1099P Gene

No data available for Paralogs for RNU6-1099P Gene

Variants for RNU6-1099P Gene

Relevant External Links for RNU6-1099P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1099P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1099P Gene

Disorders for RNU6-1099P Gene

No disorders were found for RNU6-1099P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1099P Gene

Publications for RNU6-1099P Gene

No publications were found for RNU6-1099P Gene.

Products for RNU6-1099P Gene

Sources for RNU6-1099P Gene

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