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Aliases for RNU6-1078P Gene

Subcategory (RNA class) for RNU6-1078P Gene

snRNA

Aliases for RNU6-1078P Gene

  • RNA, U6 Small Nuclear 1078, Pseudogene 2 3 5

External Ids for RNU6-1078P Gene

ORGUL Members for RNU6-1078P Gene

Previous GeneCards Identifiers for RNU6-1078P Gene

  • GC0XM071187
  • GC00U935451

Summaries for RNU6-1078P Gene

GeneCards Summary for RNU6-1078P Gene

RNU6-1078P (RNA, U6 Small Nuclear 1078, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1078P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1078P Gene

Genomics for RNU6-1078P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1078P Gene

Promoters and enhancers for RNU6-1078P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI071956 Enhancer 0.6 ENCODE 0.4 +8.0 7979 2.6 CTCF PKNOX1 CEBPB CEBPG REST NR2F2 ZNF148 SP1 GLIS1 PRDM10 NHSL2 GC0XM071966 RNU6-1078P PIR46915
GH0XI072003 Enhancer 0.8 Ensembl ENCODE 0.3 -38.2 -38178 1.7 BCOR CTCF BACH1 ZMYM3 ZIC2 RAD21 ZFHX2 ZFP36 EGR2 GC0XM071966 RNU6-1078P RPS26P11 NHSL2
GH0XI072028 Enhancer 1.1 Ensembl ENCODE 0.2 -63.8 -63791 2.7 PKNOX1 FOXA2 INSM2 RFX5 YY1 RCOR1 FOS DEK EGR2 CEBPB RTL5 NHSL2 PIN4 RPS26P11 RNU6-1078P GC0XM071966
GH0XI072018 Enhancer 1.1 Ensembl ENCODE 0.2 -53.6 -53557 2.9 ATF1 ARNT ZNF48 GLIS2 ZNF143 FOS ATF7 RUNX3 MXD4 REST NHSL2 RTL5 RPS26P11 GC0XM071966 RNU6-1078P
GH0XI071996 Enhancer 0.7 ENCODE 0.3 -31.0 -30984 1.4 MEIS2 KLF1 PKNOX1 TEAD4 TAL1 SIN3A TCF12 CTBP1 GATA3 TCF7L2 NHSL2 RTL5 GC0XM071966 RNU6-1078P RPS26P11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1078P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1078P Gene

Genomic Locations for RNU6-1078P Gene
chrX:71,965,972-71,966,074
(GRCh38/hg38)
Size:
103 bases
Orientation:
Minus strand

Genomic View for RNU6-1078P Gene

Genes around RNU6-1078P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1078P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1078P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1078P Gene

Proteins for RNU6-1078P Gene

Post-translational modifications for RNU6-1078P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1078P Gene

Domains & Families for RNU6-1078P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1078P Gene

Function for RNU6-1078P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1078P Gene

Localization for RNU6-1078P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1078P Gene

Pathways & Interactions for RNU6-1078P Gene

SuperPathways for RNU6-1078P Gene

No Data Available

Interacting Proteins for RNU6-1078P Gene

Gene Ontology (GO) - Biological Process for RNU6-1078P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1078P Gene

Drugs & Compounds for RNU6-1078P Gene

No Compound Related Data Available

Transcripts for RNU6-1078P Gene

mRNA/cDNA for RNU6-1078P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1078P Gene

No ASD Table

Relevant External Links for RNU6-1078P Gene

GeneLoc Exon Structure for
RNU6-1078P
ECgene alternative splicing isoforms for
RNU6-1078P

Expression for RNU6-1078P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1078P Gene

genes like me logo Genes that share expression patterns with RNU6-1078P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1078P Gene

Orthologs for RNU6-1078P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1078P Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia U6 34
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 80 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24003 34
  • 77 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 71 (a)
ManyToMany
Species where no ortholog for RNU6-1078P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1078P Gene

ENSEMBL:
Gene Tree for RNU6-1078P (if available)
TreeFam:
Gene Tree for RNU6-1078P (if available)

Paralogs for RNU6-1078P Gene

No data available for Paralogs for RNU6-1078P Gene

Variants for RNU6-1078P Gene

Additional Variant Information for RNU6-1078P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1078P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1078P Gene

Disorders for RNU6-1078P Gene

No disorders were found for RNU6-1078P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1078P Gene

Publications for RNU6-1078P Gene

No publications were found for RNU6-1078P Gene.

Products for RNU6-1078P Gene

Sources for RNU6-1078P Gene

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