Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1042P Gene

Subcategory (RNA class) for RNU6-1042P Gene

snRNA

Aliases for RNU6-1042P Gene

  • RNA, U6 Small Nuclear 1042, Pseudogene 2 3 5

External Ids for RNU6-1042P Gene

ORGUL Members for RNU6-1042P Gene

Previous GeneCards Identifiers for RNU6-1042P Gene

  • GC00U934806

Summaries for RNU6-1042P Gene

GeneCards Summary for RNU6-1042P Gene

RNU6-1042P (RNA, U6 Small Nuclear 1042, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1042P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1042P Gene

Genomics for RNU6-1042P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1042P Gene

Promoters and enhancers for RNU6-1042P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I150667 Enhancer 0.8 ENCODE 12.2 -33.9 -33931 1.7 FOXA2 ARID4B FEZF1 RAD21 RARA SLC30A9 ZNF335 THAP11 MIXL1 RXRA HORMAD1 ARNT RNU6-1042P GOLPH3L ENSA UBE2D3P3 CTSK ADAMTSL4-AS1 LOC100289061 ADAMTSL4
GH01I150634 Enhancer 0.8 ENCODE 11.5 -66.5 -66467 2.8 HDAC1 ATF1 RB1 ZBTB40 TCF12 CAVIN1 ZEB2 HDAC8 ZNF592 MEF2D HORMAD1 GOLPH3L ARNT RNU6-1042P ADAMTSL4-AS1 LOC100289061 ADAMTSL4 UBE2D3P3 CTSK GC01P150630
GH01I150760 Enhancer 0.8 Ensembl dbSUPER 10.9 +59.9 59935 3.2 SMARCE1 HDAC1 SRF ZNF146 SOX6 FOSL1 ADNP IKZF1 HORMAD1 ARNT RPS27AP6 UBE2D3P3 CTSK RNU6-1309P RNU6-1042P GOLPH3L PRUNE1 RNU6-884P
GH01I150649 Enhancer 0.7 ENCODE 11.5 -51.9 -51858 1.6 ESRRA NFIB NEUROD1 SIN3A BMI1 ZIC2 RFX5 E2F1 CTBP1 GATA3 HORMAD1 GOLPH3L RNU6-1042P ENSA CTSK ARNT RPS27AP6 ADAMTSL4-AS1 LOC100289061 ADAMTSL4
GH01I150640 Enhancer 0.6 ENCODE 11 -60.4 -60352 2.3 GATAD2A SMARCE1 ZNF362 CBFA2T3 ZEB2 DPF2 TCF12 SMARCA4 IKZF1 CBFA2T2 HORMAD1 RPS27AP6 GOLPH3L RNU6-1042P UBE2D3P3 CTSK RNU6-1309P ARNT GC01P150630
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1042P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1042P Gene

Genomic Locations for RNU6-1042P Gene
chr1:150,701,866-150,701,972
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1042P Gene

Genes around RNU6-1042P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1042P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1042P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1042P Gene

Proteins for RNU6-1042P Gene

Post-translational modifications for RNU6-1042P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1042P Gene

Domains & Families for RNU6-1042P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1042P Gene

Function for RNU6-1042P Gene

Phenotypes From GWAS Catalog for RNU6-1042P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1042P Gene

Localization for RNU6-1042P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1042P Gene

Pathways & Interactions for RNU6-1042P Gene

SuperPathways for RNU6-1042P Gene

No Data Available

Interacting Proteins for RNU6-1042P Gene

Gene Ontology (GO) - Biological Process for RNU6-1042P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1042P Gene

Drugs & Compounds for RNU6-1042P Gene

No Compound Related Data Available

Transcripts for RNU6-1042P Gene

mRNA/cDNA for RNU6-1042P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1042P Gene

No ASD Table

Relevant External Links for RNU6-1042P Gene

GeneLoc Exon Structure for
RNU6-1042P
ECgene alternative splicing isoforms for
RNU6-1042P

Expression for RNU6-1042P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1042P Gene

genes like me logo Genes that share expression patterns with RNU6-1042P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1042P Gene

Orthologs for RNU6-1042P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1042P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 81 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 79 (a)
OneToMany
Species where no ortholog for RNU6-1042P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1042P Gene

ENSEMBL:
Gene Tree for RNU6-1042P (if available)
TreeFam:
Gene Tree for RNU6-1042P (if available)

Paralogs for RNU6-1042P Gene

No data available for Paralogs for RNU6-1042P Gene

Variants for RNU6-1042P Gene

Additional Variant Information for RNU6-1042P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1042P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1042P Gene

Disorders for RNU6-1042P Gene

No disorders were found for RNU6-1042P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1042P Gene

Publications for RNU6-1042P Gene

No publications were found for RNU6-1042P Gene.

Products for RNU6-1042P Gene

Sources for RNU6-1042P Gene

Content
Loading form....