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Aliases for RNU6-1007P Gene

Subcategory (RNA class) for RNU6-1007P Gene


Aliases for RNU6-1007P Gene

  • RNA, U6 Small Nuclear 1007, Pseudogene 2 3 5

External Ids for RNU6-1007P Gene

ORGUL Members for RNU6-1007P Gene

Previous GeneCards Identifiers for RNU6-1007P Gene

  • GC02P088715
  • GC00U935776

Summaries for RNU6-1007P Gene

GeneCards Summary for RNU6-1007P Gene

RNU6-1007P (RNA, U6 Small Nuclear 1007, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-1007P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-1007P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-1007P Gene

Genomics for RNU6-1007P Gene

Regulatory Elements for RNU6-1007P Gene

Enhancers for RNU6-1007P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H088350 1.1 Ensembl ENCODE 10.1 +64.1 64085 1.5 PKNOX1 ZNF2 RAD21 GLIS2 CBX5 EGR1 ZNF143 CREM IKZF2 EGR2 RNU6-1007P PIR41108 GC02P088321
GH02H088442 0.6 ENCODE 12.1 -28.5 -28549 2.3 MAFF ZNF316 MAFG POU5F1 NFE2 EMSY MAFK TEX37 RNU6-1007P LOC101928403 FOXI3 ENSG00000224291
GH02H088269 0.5 ENCODE 10.2 +145.3 145277 1.3 FOXA2 FOXA3 CEBPA ZIC2 RNU6-1007P RNY4P15 GC02M088230 GC02P088321
GH02H088443 0.2 ENCODE 11.4 -27.3 -27273 0.2 RNU6-1007P ENSG00000224291 FOXI3
GH02H088415 0.4 ENCODE 0.7 -1.3 -1328 1.9 POU5F1 LOC101928371 THNSL2 RNU6-1007P ENSG00000224291
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1007P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1007P Gene

Genomic Locations for RNU6-1007P Gene
107 bases
Minus strand

Genomic View for RNU6-1007P Gene

Genes around RNU6-1007P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1007P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1007P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1007P Gene

ORGUL Member Location for RNU6-1007P Gene

ORGUL Member Location for RNU6-1007P gene

Proteins for RNU6-1007P Gene

Post-translational modifications for RNU6-1007P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1007P Gene

Domains & Families for RNU6-1007P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1007P Gene

Function for RNU6-1007P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1007P Gene

Localization for RNU6-1007P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1007P Gene

Pathways & Interactions for RNU6-1007P Gene

SuperPathways for RNU6-1007P Gene

No Data Available

Interacting Proteins for RNU6-1007P Gene

Gene Ontology (GO) - Biological Process for RNU6-1007P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6-1007P Gene

Drugs & Compounds for RNU6-1007P Gene

No Compound Related Data Available

Transcripts for RNU6-1007P Gene

mRNA/cDNA for RNU6-1007P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1007P Gene

No ASD Table

Relevant External Links for RNU6-1007P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6-1007P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1007P Gene

Orthologs for RNU6-1007P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1007P Gene

Organism Taxonomy Gene Similarity Type Details
(Monodelphis domestica)
Mammalia U6 34
  • 33 (a)
(Canis familiaris)
Mammalia U6 34
  • 32 (a)
(Mus musculus)
Mammalia Gm23341 34
  • 32 (a)
(Bos Taurus)
Mammalia U6 34
  • 30 (a)
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 23 (a)
Species where no ortholog for RNU6-1007P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1007P Gene

Gene Tree for RNU6-1007P (if available)
Gene Tree for RNU6-1007P (if available)

Paralogs for RNU6-1007P Gene

No data available for Paralogs for RNU6-1007P Gene

Variants for RNU6-1007P Gene

Relevant External Links for RNU6-1007P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1007P Gene

Disorders for RNU6-1007P Gene

No disorders were found for RNU6-1007P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1007P Gene

Publications for RNU6-1007P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-1007P Gene

Sources for RNU6-1007P Gene

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