Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1005P Gene

Subcategory (RNA class) for RNU6-1005P Gene

snRNA

Aliases for RNU6-1005P Gene

  • RNA, U6 Small Nuclear 1005, Pseudogene 2 3 5

External Ids for RNU6-1005P Gene

ORGUL Members for RNU6-1005P Gene

Previous GeneCards Identifiers for RNU6-1005P Gene

  • GC16P021660
  • GC00U935829

Summaries for RNU6-1005P Gene

GeneCards Summary for RNU6-1005P Gene

RNU6-1005P (RNA, U6 Small Nuclear 1005, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1005P Gene

Genomics for RNU6-1005P Gene

Regulatory Elements for RNU6-1005P Gene

Enhancers for RNU6-1005P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021610 1.3 FANTOM5 ENCODE 12.2 -30.0 -30048 3.2 HDAC1 ATF1 ARNT TBL1XR1 GATA2 SCRT2 SIRT6 SMARCC1 ZBTB11 USF2 IGSF6 RNU6-1005P RNU6-196P ENSG00000261596 METTL9 CRYM PIR54824
GH16F021589 1.1 Ensembl ENCODE 12.2 -51.3 -51309 3.1 HDAC1 PKNOX1 ARID4B DMAP1 ZSCAN9 DNMT3B ZBTB40 ZNF335 HMG20B CEBPB RNU6-196P RNU6-1005P IGSF6 OTOA ENSG00000252798 METTL9
GH16F021583 1.1 Ensembl ENCODE 12.2 -57.8 -57763 0.6 ARID4B ZNF2 RAD21 GTF3C2 ZNF335 ZNF391 MIXL1 ZNF362 ZNF654 CEBPB SMG1P1 ENSG00000260635 SMG1P4 NPIPB5 RNU6-1005P RNU6-196P IGSF6 THUMPD1 OTOA MFSD13B
GH16F021608 0.9 FANTOM5 ENCODE 11.7 -32.9 -32930 0.3 PKNOX1 GATA2 MAX HMBOX1 FOXP2 KDM1A MYC IGSF6 ENSG00000261596 RNU6-1005P RNU6-196P METTL9 CRYM PIR54824
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1005P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-1005P Gene

Chromosome:
16
Start:
21,642,054 bp from pter
End:
21,642,160 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1005P Gene

Genes around RNU6-1005P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1005P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1005P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1005P Gene

Proteins for RNU6-1005P Gene

Post-translational modifications for RNU6-1005P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1005P Gene

Domains & Families for RNU6-1005P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1005P Gene

Function for RNU6-1005P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1005P Gene

Localization for RNU6-1005P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1005P Gene

Pathways & Interactions for RNU6-1005P Gene

SuperPathways for RNU6-1005P Gene

No Data Available

Interacting Proteins for RNU6-1005P Gene

Gene Ontology (GO) - Biological Process for RNU6-1005P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1005P Gene

Transcripts for RNU6-1005P Gene

mRNA/cDNA for RNU6-1005P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1005P Gene

No ASD Table

Relevant External Links for RNU6-1005P Gene

GeneLoc Exon Structure for
RNU6-1005P
ECgene alternative splicing isoforms for
RNU6-1005P

Expression for RNU6-1005P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1005P Gene

genes like me logo Genes that share expression patterns with RNU6-1005P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1005P Gene

Orthologs for RNU6-1005P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1005P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 90 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24410 35
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 84 (a)
ManyToMany
Species where no ortholog for RNU6-1005P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1005P Gene

ENSEMBL:
Gene Tree for RNU6-1005P (if available)
TreeFam:
Gene Tree for RNU6-1005P (if available)

Paralogs for RNU6-1005P Gene

No data available for Paralogs for RNU6-1005P Gene

Variants for RNU6-1005P Gene

Relevant External Links for RNU6-1005P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1005P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1005P Gene

Disorders for RNU6-1005P Gene

No disorders were found for RNU6-1005P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1005P Gene

Publications for RNU6-1005P Gene

No publications were found for RNU6-1005P Gene.

Products for RNU6-1005P Gene

Sources for RNU6-1005P Gene

Content
Loading form....