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Aliases for RNU6-1 Gene

Subcategory (RNA class) for RNU6-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU6-1 Gene

  • RNA, U6 Small Nuclear 1 2 3 5
  • RNA, U6A Small Nuclear 2 3
  • RNU6A 3
  • RNU6 3
  • U6-1 3
  • U6 3

External Ids for RNU6-1 Gene

Previous HGNC Symbols for RNU6-1 Gene

  • RNU6A

Previous GeneCards Identifiers for RNU6-1 Gene

  • GC15U900950
  • GC15M065922
  • GC15M068132
  • GC07M122819

Summaries for RNU6-1 Gene

GeneCards Summary for RNU6-1 Gene

RNU6-1 (RNA, U6 Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class. Diseases associated with RNU6-1 include Poikiloderma With Neutropenia. Among its related pathways are mRNA Splicing - Major Pathway and Spliceosomal Splicing Cycle.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1 Gene

Genomics for RNU6-1 Gene

Regulatory Elements for RNU6-1 Gene

Enhancers for RNU6-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F067782 2.5 FANTOM5 Ensembl ENCODE 12.1 +56.0 56041 3.6 HDGF PKNOX1 FEZF1 BMI1 RAD21 ZNF335 ZNF121 ZNF366 SCRT2 KLF7 MAP2K5 LOC101929076 SKOR1 RNU6-1 IQCH-AS1 PIAS1 HNRNPA1P5
GH15F067787 1.6 VISTA 11.6 +52.4 52385 1.4 ZNF664 NR2F6 WT1 ZNF18 SP7 SKOR1 RNU6-1 LOC101929076 MAP2K5 IQCH-AS1 PIAS1 HNRNPA1P5
GH15F067879 1.7 FANTOM5 Ensembl ENCODE 10.6 -42.6 -42596 6.6 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 SIN3A FEZF1 DMAP1 ZNF2 PIAS1 IQCH-AS1 RNU6-1 LOC101929076 SKOR1 MAP2K5 CALML4 FEM1B GC15M067840 GC15M067974
GH15F067548 1.4 Ensembl ENCODE 10.3 +291.4 291444 1.2 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 IQCH-AS1 C15orf61 SKOR1 LOC101929076 RNU6-1 MAP2K5 GC15P067716
GH15F067967 1.3 FANTOM5 Ensembl ENCODE 10.3 -128.4 -128409 1.5 KLF1 PKNOX1 BMI1 ZFHX2 POLR2A PATZ1 ZNF600 EGR2 RFX1 SP3 PIAS1 LOC101929076 RNU6-1 SKOR1 LOC105370872 C15orf61 GC15M067974 GC15M067840
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-1 on UCSC Golden Path with GeneCards custom track

Promoters for RNU6-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000021792 45 2401 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for RNU6-1 Gene

Chromosome:
15
Start:
67,839,939 bp from pter
End:
67,840,045 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-1 Gene

Genes around RNU6-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1 Gene

Proteins for RNU6-1 Gene

Post-translational modifications for RNU6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1 Gene

Domains & Families for RNU6-1 Gene

Gene Families for RNU6-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1 Gene

Function for RNU6-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1 Gene

Localization for RNU6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-1 Gene

Pathways & Interactions for RNU6-1 Gene

genes like me logo Genes that share pathways with RNU6-1: view

Pathways by source for RNU6-1 Gene

2 KEGG pathways for RNU6-1 Gene
1 Qiagen pathway for RNU6-1 Gene

Interacting Proteins for RNU6-1 Gene

Gene Ontology (GO) - Biological Process for RNU6-1 Gene

None

No data available for SIGNOR curated interactions for RNU6-1 Gene

Transcripts for RNU6-1 Gene

mRNA/cDNA for RNU6-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1 Gene

No ASD Table

Relevant External Links for RNU6-1 Gene

GeneLoc Exon Structure for
RNU6-1
ECgene alternative splicing isoforms for
RNU6-1

Expression for RNU6-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1 Gene

genes like me logo Genes that share expression patterns with RNU6-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-1 Gene

Orthologs for RNU6-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 100 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26427 35
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
Species where no ortholog for RNU6-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1 Gene

ENSEMBL:
Gene Tree for RNU6-1 (if available)
TreeFam:
Gene Tree for RNU6-1 (if available)

Paralogs for RNU6-1 Gene

No data available for Paralogs for RNU6-1 Gene

Variants for RNU6-1 Gene

Sequence variations from dbSNP and Humsavar for RNU6-1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs11289410 -- 67,839,509(+) GTGGC(-/T)TTTTT downstream-variant-500B, upstream-variant-2KB
rs114164477 -- 67,839,943(+) TAAAA(A/G)TATGG nc-transcript-variant, upstream-variant-2KB
rs116723550 -- 67,841,041(+) TCCGC(G/T)TTCCT upstream-variant-2KB
rs117908309 -- 67,839,989(+) GGGCC(A/G)TGCTA nc-transcript-variant, upstream-variant-2KB
rs12917587 -- 67,841,279(+) CTGGG(A/G)GATGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNU6-1 Gene

Variant ID Type Subtype PubMed ID
nsv9662 CNV gain 18304495
nsv956356 CNV deletion 24416366
nsv953938 CNV deletion 24416366
nsv833704 CNV gain 17160897
nsv832764 CNV gain 17160897
nsv829809 CNV loss 17160897
nsv828360 CNV loss 20364138
nsv826912 CNV gain 20364138
nsv7462 OTHER inversion 18451855
nsv578188 CNV loss 21841781
nsv569803 CNV gain 21841781
nsv545382 CNV loss 21841781
nsv545381 CNV gain 21841781
nsv524931 CNV gain 19592680
nsv512148 CNV loss 21212237
nsv470101 CNV loss 18288195
nsv469845 CNV loss 16826518
nsv428427 CNV gain 18775914
nsv3041 CNV insertion 18451855
nsv2385 CNV insertion 18451855
nsv1578 CNV insertion 18451855
nsv1160555 CNV deletion 26073780
nsv1068280 CNV deletion 25765185
nsv1041463 CNV gain 25217958
esv996651 CNV deletion 20482838
esv8509 CNV loss 19470904
esv3891198 CNV gain 25118596
esv3890859 CNV loss 25118596
esv3643385 CNV gain 21293372
esv3643384 CNV loss 21293372
esv3643383 CNV gain 21293372
esv3584226 CNV gain 25503493
esv3574863 CNV loss 25503493
esv3574862 CNV loss 25503493
esv3545926 CNV deletion 23714750
esv3259 CNV loss 18987735
esv2759205 CNV gain 17122850
esv2758920 CNV gain+loss 17122850
esv2758896 CNV gain+loss 17122850
esv2758743 CNV gain+loss 17122850
esv2733339 CNV deletion 23290073
esv2672070 CNV deletion 23128226
esv2523863 CNV deletion 19546169
esv1972594 CNV deletion 18987734
esv1002005 CNV deletion 20482838
dgv135n111 CNV deletion 26073780
dgv134n111 CNV deletion 26073780

Relevant External Links for RNU6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU6-1 Gene

Disorders for RNU6-1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RNU6-1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
poikiloderma with neutropenia
  • clericuzio type poikiloderma with neutropenia
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RNU6-1

Genetic Association Database (GAD)
RNU6-1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU6-1
genes like me logo Genes that share disorders with RNU6-1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNU6-1 Gene

Publications for RNU6-1 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 46 64
  2. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. (PMID: 12711679) Domitrovich A.M. … Kunkel G.R. (Nucleic Acids Res. 2003) 2 3 64
  3. Upstream elements required for efficient transcription of a human U6 RNA gene resemble those of U1 and U2 genes even though a different polymerase is used. (PMID: 3360322) Kunkel G.R. … Pederson T. (Genes Dev. 1988) 2 3 64
  4. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. (PMID: 25263594) Guo R. … Shi Y. (Mol. Cell 2014) 3 64
  5. Identification of suitable reference genes for hepatic microRNA quantitation. (PMID: 24606728) Lamba V. … Lamba J.K. (BMC Res Notes 2014) 3 64

Products for RNU6-1 Gene

Sources for RNU6-1 Gene

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