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Aliases for RNU5F-5P Gene

Aliases for RNU5F-5P Gene

  • RNA, U5F Small Nuclear 5, Pseudogene 2 3

External Ids for RNU5F-5P Gene

Previous GeneCards Identifiers for RNU5F-5P Gene

  • GC00U933114
  • GC22M030309
  • GC22U900866

Summaries for RNU5F-5P Gene

GeneCards Summary for RNU5F-5P Gene

RNU5F-5P (RNA, U5F Small Nuclear 5, Pseudogene) is a Pseudogene.

Additional gene information for RNU5F-5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-5P Gene

Genomics for RNU5F-5P Gene

GeneHancer (GH) Regulatory Elements for RNU5F-5P Gene

Promoters and enhancers for RNU5F-5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I029882 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.8 +27.1 27112 2.5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 POLR2B GLIS2 MTMR3 RNU5F-5P ASCC2 RNU6-331P GC22M029900
GH22I029616 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +288.1 288126 11.6 PKNOX1 FOXA2 NEUROD1 SIN3A FEZF1 YY1 ZNF121 ZNF143 FOS KLF13 THOC5 NIPSNAP1 RNU5F-5P GAS2L1 NF2 RPEP4 PIR57472
GH22I029780 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.2 +129.2 129215 2.8 PKNOX1 FOXA2 ARNT ARID4B TCF12 CBX5 GATA2 FOS ATF7 NCOA1 PES1 ASCC2 HORMAD2-AS1 SF3A1 RNU5F-5P UQCR10
GH22I029640 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10 +269.2 269227 1.4 PKNOX1 ZSCAN4 INSM2 FEZF1 ZNF335 ZNF366 ZSCAN5C OVOL3 TSHZ1 ZNF488 THOC5 RNU5F-5P SEC14L2 ENSG00000249590 NF2 NIPSNAP1 MTMR3 PIR57472 RPEP4
GH22I029992 Enhancer 1.1 Ensembl ENCODE 11 -83.3 -83255 3.4 PKNOX1 FOXA2 FEZF1 ZNF2 FOS RXRA TSHZ1 PPARG NFIL3 GLIS1 MTMR3 ASCC2 HORMAD2-AS1 RNU5F-5P LIF THOC5 MIR6818 ENSG00000279159
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5F-5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5F-5P Gene

Genomic Locations for RNU5F-5P Gene
chr22:29,910,788-29,910,840
(GRCh38/hg38)
Size:
53 bases
Orientation:
Minus strand

Genomic View for RNU5F-5P Gene

Genes around RNU5F-5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5F-5P Gene

Proteins for RNU5F-5P Gene

Post-translational modifications for RNU5F-5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-5P Gene

Domains & Families for RNU5F-5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-5P Gene

Function for RNU5F-5P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-5P Gene

Localization for RNU5F-5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5F-5P Gene

Pathways & Interactions for RNU5F-5P Gene

SuperPathways for RNU5F-5P Gene

No Data Available

Interacting Proteins for RNU5F-5P Gene

Gene Ontology (GO) - Biological Process for RNU5F-5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5F-5P Gene

Drugs & Compounds for RNU5F-5P Gene

No Compound Related Data Available

Transcripts for RNU5F-5P Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-5P Gene

No ASD Table

Relevant External Links for RNU5F-5P Gene

GeneLoc Exon Structure for
RNU5F-5P
ECgene alternative splicing isoforms for
RNU5F-5P

No data available for mRNA/cDNA for RNU5F-5P Gene

Expression for RNU5F-5P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-5P Gene

Orthologs for RNU5F-5P Gene

No data available for Orthologs and Evolution for RNU5F-5P Gene

Paralogs for RNU5F-5P Gene

No data available for Paralogs for RNU5F-5P Gene

Variants for RNU5F-5P Gene

Additional Variant Information for RNU5F-5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5F-5P Gene

Disorders for RNU5F-5P Gene

No disorders were found for RNU5F-5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5F-5P Gene

Publications for RNU5F-5P Gene

No publications were found for RNU5F-5P Gene.

Products for RNU5F-5P Gene

Sources for RNU5F-5P Gene

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