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Aliases for RNU5F-1 Gene

Subcategory (RNA class) for RNU5F-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU5F-1 Gene

  • RNA, U5F Small Nuclear 1 2 3
  • RNA, U5F Small Nuclear 2
  • RNU5F 3
  • U5F 3

External Ids for RNU5F-1 Gene

ORGUL Members for RNU5F-1 Gene

Previous HGNC Symbols for RNU5F-1 Gene

  • RNU5F

Previous GeneCards Identifiers for RNU5F-1 Gene

  • GC22M030308
  • GC01M045190

Summaries for RNU5F-1 Gene

GeneCards Summary for RNU5F-1 Gene

RNU5F-1 (RNA, U5F Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-1 Gene

Genomics for RNU5F-1 Gene

Genomic Location for RNU5F-1 Gene

Start:
44,721,786 bp from pter
End:
44,721,902 bp from pter
Size:
117 bases
Orientation:
Minus strand

Genomic View for RNU5F-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU5F-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5F-1 Gene

No data available for Regulatory Elements for RNU5F-1 Gene

Proteins for RNU5F-1 Gene

Post-translational modifications for RNU5F-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-1 Gene

Domains for RNU5F-1 Gene

Gene Families for RNU5F-1 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5F-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-1 Gene

Function for RNU5F-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU5F-1 Gene

Localization for RNU5F-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5F-1 Gene

Pathways for RNU5F-1 Gene

SuperPathways for RNU5F-1 Gene

No Data Available

Interacting Proteins for RNU5F-1 Gene

Gene Ontology (GO) - Biological Process for RNU5F-1 Gene

None

No data available for Pathways by source for RNU5F-1 Gene

Transcripts for RNU5F-1 Gene

mRNA/cDNA for RNU5F-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-1 Gene

No ASD Table

Relevant External Links for RNU5F-1 Gene

GeneLoc Exon Structure for
RNU5F-1
ECgene alternative splicing isoforms for
RNU5F-1

Expression for RNU5F-1 Gene

mRNA expression in normal human tissues for RNU5F-1 Gene

genes like me logo Genes that share expressions with RNU5F-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNU5F-1 Gene

Orthologs for RNU5F-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5F-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 36
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 36
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 36
  • 71 (a)
OneToMany
Species with no ortholog for RNU5F-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5F-1 Gene

ENSEMBL:
Gene Tree for RNU5F-1 (if available)
TreeFam:
Gene Tree for RNU5F-1 (if available)

Paralogs for RNU5F-1 Gene

No data available for Paralogs for RNU5F-1 Gene

Variants for RNU5F-1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU5F-1 Gene

Variant ID Type Subtype PubMed ID
nsv160622 CNV Insertion 16902084
esv1008351 CNV Insertion 20482838
esv1506490 CNV Insertion 17803354
esv2723117 CNV Deletion 23290073
esv2281071 CNV Deletion 18987734
esv4170 CNV Deletion 18987735
esv1609241 CNV Deletion 17803354
esv1356387 CNV Insertion 17803354
nsv832636 CNV Loss 17160897
nsv819514 CNV Loss 19587683
esv9238 CNV Gain 19470904
esv1351321 CNV Insertion 17803354
esv5550 CNV Gain 19470904
nsv4632 CNV Insertion 18451855
esv2662248 CNV Deletion 23128226
esv2723128 CNV Deletion 23290073
nsv826664 CNV Loss 20364138
esv2723140 CNV Deletion 23290073
esv2360153 CNV Deletion 18987734
esv3201 CNV Deletion 18987735
esv2723151 CNV Deletion 23290073
esv1103180 CNV Deletion 17803354
esv2107700 CNV Deletion 18987734
esv2723162 CNV Deletion 23290073
esv2676354 CNV Deletion 23128226
esv2665152 CNV Deletion 23128226
esv2663970 CNV Deletion 23128226

Relevant External Links for RNU5F-1 Gene

HapMap Linkage Disequilibrium report
RNU5F-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RNU5F-1 Gene

Disorders for RNU5F-1 Gene

No disorders were found for RNU5F-1 Gene.

No data available for UniProtKB/Swiss-Prot for RNU5F-1 Gene

Publications for RNU5F-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer E.J. … Steitz J.A. (Mol. Cell. Biol. 1992) 2 3

Products for RNU5F-1 Gene

Sources for RNU5F-1 Gene

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