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Aliases for RNU5F-1 Gene

Subcategory (RNA class) for RNU5F-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU5F-1 Gene

  • RNA, U5F Small Nuclear 1 2 3 5
  • RNA, U5F Small Nuclear 2
  • RNU5F 3
  • U5F 3

External Ids for RNU5F-1 Gene

ORGUL Members for RNU5F-1 Gene

Previous HGNC Symbols for RNU5F-1 Gene

  • RNU5F

Previous GeneCards Identifiers for RNU5F-1 Gene

  • GC22M030308
  • GC01M045190

Summaries for RNU5F-1 Gene

GeneCards Summary for RNU5F-1 Gene

RNU5F-1 (RNA, U5F Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

Additional gene information for RNU5F-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-1 Gene

Genomics for RNU5F-1 Gene

GeneHancer (GH) Regulatory Elements for RNU5F-1 Gene

Promoters and enhancers for RNU5F-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I044720 Enhancer 1.5 Ensembl ENCODE dbSUPER 550.8 -0.9 -902 4.8 MLX ZFP64 FEZF1 YBX1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC LOC105378690 RNU5F-1 GC01M044722 TOE1 GPBP1L1 RPS8 RPL7AP16 MUTYH HECTD3 DMAP1
GH01I044671 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 +46.8 46801 6.3 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 C1orf228 TMEM53 TOE1 MUTYH ARTN RNU5F-1 NASP KIF2C BTBD19 RPS8
GH01I044628 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 10.6 +90.4 90423 6.6 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 YY1 POLR2B PIR47647 TOE1 DMAP1 KDM4A C1orf228 HECTD3 RPS8 MUTYH CCDC17 ARTN
GH01I044696 Enhancer 0.8 Ensembl ENCODE 12.8 +24.6 24576 2 MEIS2 TAL1 CBFA2T3 EBF1 GABPA TCF12 POLR2A IKZF1 ETV6 IKZF2 C1orf228 RNU5F-1 TMEM53 GC01P044699 LOC105378690
GH01I044653 Enhancer 0.8 dbSUPER 10.9 +69.4 69416 0.9 HDGF RB1 SREBF2 KLF17 RAD21 GLIS2 ARID2 ZNF366 ZNF143 RCOR1 C1orf228 RNU5F-1 GC01P044661 TMEM53 PIR47647
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5F-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5F-1 Gene

Genomic Locations for RNU5F-1 Gene
chr1:44,721,786-44,721,902
(GRCh38/hg38)
Size:
117 bases
Orientation:
Minus strand
chr1:45,187,458-45,187,574
(GRCh37/hg19)

Genomic View for RNU5F-1 Gene

Genes around RNU5F-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5F-1 Gene

Proteins for RNU5F-1 Gene

Post-translational modifications for RNU5F-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-1 Gene

Domains & Families for RNU5F-1 Gene

Gene Families for RNU5F-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5F-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-1 Gene

Function for RNU5F-1 Gene

Phenotypes From GWAS Catalog for RNU5F-1 Gene

Phenotypes for RNU5F-1 Gene

GenomeRNAi human phenotypes for RNU5F-1:
genes like me logo Genes that share phenotypes with RNU5F-1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-1 Gene

Localization for RNU5F-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5F-1 Gene

Pathways & Interactions for RNU5F-1 Gene

SuperPathways for RNU5F-1 Gene

No Data Available

Interacting Proteins for RNU5F-1 Gene

Gene Ontology (GO) - Biological Process for RNU5F-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5F-1 Gene

Drugs & Compounds for RNU5F-1 Gene

No Compound Related Data Available

Transcripts for RNU5F-1 Gene

mRNA/cDNA for RNU5F-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-1 Gene

No ASD Table

Relevant External Links for RNU5F-1 Gene

GeneLoc Exon Structure for
RNU5F-1
ECgene alternative splicing isoforms for
RNU5F-1

Expression for RNU5F-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5F-1 Gene

genes like me logo Genes that share expression patterns with RNU5F-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-1 Gene

Orthologs for RNU5F-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5F-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 34
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 34
  • 71 (a)
OneToMany
Species where no ortholog for RNU5F-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5F-1 Gene

ENSEMBL:
Gene Tree for RNU5F-1 (if available)
TreeFam:
Gene Tree for RNU5F-1 (if available)

Paralogs for RNU5F-1 Gene

No data available for Paralogs for RNU5F-1 Gene

Variants for RNU5F-1 Gene

Sequence variations from dbSNP and Humsavar for RNU5F-1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000019955 -- 44,722,199(-) G/C upstream_transcript_variant
rs1000330214 -- 44,722,433(-) G/T upstream_transcript_variant
rs1001421607 -- 44,722,740(-) A/G upstream_transcript_variant
rs1002194725 -- 44,722,527(-) C/A upstream_transcript_variant
rs1003443676 -- 44,721,552(-) T/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNU5F-1 Gene

Variant ID Type Subtype PubMed ID
esv3585889 CNV loss 21293372

Additional Variant Information for RNU5F-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU5F-1 Gene

Disorders for RNU5F-1 Gene

Additional Disease Information for RNU5F-1

No disorders were found for RNU5F-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5F-1 Gene

Publications for RNU5F-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer EJ … Steitz JA (Molecular and cellular biology 1992) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for RNU5F-1 Gene

Sources for RNU5F-1 Gene

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