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Aliases for RNU5F-1 Gene

Subcategory (RNA class) for RNU5F-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU5F-1 Gene

  • RNA, U5F Small Nuclear 1 2 3 5
  • RNA, U5F Small Nuclear 2
  • RNU5F 3
  • U5F 3

External Ids for RNU5F-1 Gene

ORGUL Members for RNU5F-1 Gene

Previous HGNC Symbols for RNU5F-1 Gene

  • RNU5F

Previous GeneCards Identifiers for RNU5F-1 Gene

  • GC22M030308
  • GC01M045190

Summaries for RNU5F-1 Gene

GeneCards Summary for RNU5F-1 Gene

RNU5F-1 (RNA, U5F Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-1 Gene

Genomics for RNU5F-1 Gene

Regulatory Elements for RNU5F-1 Gene

Enhancers for RNU5F-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G044671 1.4 ENCODE dbSUPER 11.6 +46.8 46802 6.3 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS TOE1 C1orf228 RNU5F-1 BTBD19 RPS8 GC01P044699
GH01G044628 1.4 ENCODE dbSUPER 10.6 +90.4 90423 6.6 HDGF PKNOX1 MLX ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 DMAP1 RPS8 TOE1 KDM4A C1orf228 ZSWIM5 RNU5F-1 ERI3 ERI3-IT1 RNF220
GH01G044696 0.9 Ensembl ENCODE 12.7 +24.6 24577 2.0 BHLHE40 TAL1 EBF1 TCF12 POLR2A IKZF1 EED ETV6 IKZF2 SPI1 RNU5F-1 C1orf228 TMEM53 GC01P044699
GH01G044653 0.9 dbSUPER 10.9 +69.4 69416 0.9 HDGF PKNOX1 RB1 SREBF2 WRNIP1 KLF17 RAD21 GLIS2 ZNF366 ZNF143 C1orf228 RNU5F-1 GC01P044661 PIR47647
GH01G044694 0.7 ENCODE 12.2 +26.8 26839 0.2 CTCF CBFB GATAD2B DPF2 RAD21 EED ZKSCAN8 IKZF1 HNF4A ETV6 C1orf228 RNU5F-1 TMEM53 GC01P044699
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5F-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5F-1 Gene

Chromosome:
1
Start:
44,721,786 bp from pter
End:
44,721,902 bp from pter
Size:
117 bases
Orientation:
Minus strand

Genomic View for RNU5F-1 Gene

Genes around RNU5F-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5F-1 Gene

Proteins for RNU5F-1 Gene

Post-translational modifications for RNU5F-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-1 Gene

Domains & Families for RNU5F-1 Gene

Gene Families for RNU5F-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5F-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-1 Gene

Function for RNU5F-1 Gene

Phenotypes for RNU5F-1 Gene

GenomeRNAi human phenotypes for RNU5F-1:
genes like me logo Genes that share phenotypes with RNU5F-1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-1 Gene

Localization for RNU5F-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5F-1 Gene

Pathways & Interactions for RNU5F-1 Gene

SuperPathways for RNU5F-1 Gene

No Data Available

Interacting Proteins for RNU5F-1 Gene

Gene Ontology (GO) - Biological Process for RNU5F-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5F-1 Gene

Drugs & Compounds for RNU5F-1 Gene

No Compound Related Data Available

Transcripts for RNU5F-1 Gene

mRNA/cDNA for RNU5F-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-1 Gene

No ASD Table

Relevant External Links for RNU5F-1 Gene

GeneLoc Exon Structure for
RNU5F-1
ECgene alternative splicing isoforms for
RNU5F-1

Expression for RNU5F-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5F-1 Gene

genes like me logo Genes that share expression patterns with RNU5F-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-1 Gene

Orthologs for RNU5F-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5F-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 35
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 35
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 35
  • 71 (a)
OneToMany
Species where no ortholog for RNU5F-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5F-1 Gene

ENSEMBL:
Gene Tree for RNU5F-1 (if available)
TreeFam:
Gene Tree for RNU5F-1 (if available)

Paralogs for RNU5F-1 Gene

No data available for Paralogs for RNU5F-1 Gene

Variants for RNU5F-1 Gene

Sequence variations from dbSNP and Humsavar for RNU5F-1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000019955 -- 44,722,199(+) CACTT(C/G)ACTAC intron-variant, upstream-variant-2KB, reference, missense
rs1000330214 -- 44,722,433(+) GTGGT(G/T)GCTCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001421607 -- 44,722,740(+) AAAAA(A/G)CAAAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002194725 -- 44,722,527(+) GGAGG(A/C)CTGAG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003443676 -- 44,721,552(+) AAATG(A/T)TTACA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RNU5F-1 Gene

Variant ID Type Subtype PubMed ID
esv3585889 CNV loss 21293372

Relevant External Links for RNU5F-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU5F-1 Gene

Disorders for RNU5F-1 Gene

Relevant External Links for RNU5F-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU5F-1

No disorders were found for RNU5F-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5F-1 Gene

Publications for RNU5F-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer E.J. … Steitz J.A. (Mol. Cell. Biol. 1992) 2 3 64

Products for RNU5F-1 Gene

Sources for RNU5F-1 Gene

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