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Aliases for RNU5E-6P Gene

Subcategory (RNA class) for RNU5E-6P Gene


Aliases for RNU5E-6P Gene

  • RNA, U5E Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU5E-6P Gene

ORGUL Members for RNU5E-6P Gene

Previous GeneCards Identifiers for RNU5E-6P Gene

  • GC00U933513
  • GC01M045287

Summaries for RNU5E-6P Gene

GeneCards Summary for RNU5E-6P Gene

RNU5E-6P (RNA, U5E Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU5E-6P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

Additional gene information for RNU5E-6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-6P Gene

Genomics for RNU5E-6P Gene

GeneHancer (GH) Regulatory Elements for RNU5E-6P Gene

Promoters and enhancers for RNU5E-6P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I044818 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 550.8 +0.0 19 2.9 ZFP64 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D SSRP1 GLIS1 RNU5E-6P GPBP1L1 TOE1 RPL7AP16 HECTD3 RPS8 MUTYH RPS15AP10 DMAP1 BEST4
GH01I044805 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +9.5 9546 10.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 MEF2D SSRP1 BTBD19 TOE1 GPBP1L1 RPS8 HECTD3 MUTYH RPL7AP16 RPS15AP10 ENSG00000225721 UROD
GH01I044825 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.8 -6754 2 HDGF MLX ARID4B DMAP1 ZNF48 GLIS2 SP5 ZHX2 MXD4 ZNF592 UROD BEST4 BTBD19 RNU5E-6P PTCH2
GH01I044835 Enhancer 1.1 Ensembl ENCODE 0.4 -16.1 -16090 0.6 HDAC1 ELF3 PKNOX1 ATF1 RB1 ARNT ARID4B KLF17 SIN3A RAD21 UROD PTCH2 RNU5E-6P
GH01I044830 Enhancer 0.8 dbSUPER 0.4 -11.1 -11100 1.4 CTCF KLF1 NFRKB ZNF384 ZIC2 RAD21 RELA ZNF335 TCF12 POLR2A TCTEX1D4 BTBD19 PLK3 RPS8 BEST4 RNU5D-1 KIF2C EIF2B3 PPIAP35 UROD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5E-6P Gene

Genomic Locations for RNU5E-6P Gene
115 bases
Minus strand

Genomic View for RNU5E-6P Gene

Genes around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P gene

Proteins for RNU5E-6P Gene

Post-translational modifications for RNU5E-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-6P Gene

Domains & Families for RNU5E-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-6P Gene

Function for RNU5E-6P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-6P Gene

Localization for RNU5E-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5E-6P Gene

Pathways & Interactions for RNU5E-6P Gene

SuperPathways for RNU5E-6P Gene

No Data Available

Interacting Proteins for RNU5E-6P Gene

Gene Ontology (GO) - Biological Process for RNU5E-6P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU5E-6P Gene

Drugs & Compounds for RNU5E-6P Gene

No Compound Related Data Available

Transcripts for RNU5E-6P Gene

mRNA/cDNA for RNU5E-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-6P Gene

No ASD Table

Relevant External Links for RNU5E-6P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU5E-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5E-6P Gene

genes like me logo Genes that share expression patterns with RNU5E-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-6P Gene

Orthologs for RNU5E-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU5E-6P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U5 34
  • 88 (a)
(Bos Taurus)
Mammalia U5 34
  • 85 (a)
(Monodelphis domestica)
Mammalia U5 34 34 34
  • 85 (a)
(Canis familiaris)
Mammalia U5 34
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia U5 34
  • 66 (a)
Species where no ortholog for RNU5E-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-6P Gene

Gene Tree for RNU5E-6P (if available)
Gene Tree for RNU5E-6P (if available)

Paralogs for RNU5E-6P Gene

No data available for Paralogs for RNU5E-6P Gene

Variants for RNU5E-6P Gene

Additional Variant Information for RNU5E-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-6P Gene

Disorders for RNU5E-6P Gene

No disorders were found for RNU5E-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5E-6P Gene

Publications for RNU5E-6P Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU5E-6P Gene

Sources for RNU5E-6P Gene

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