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Aliases for RNU5E-6P Gene

Subcategory (RNA class) for RNU5E-6P Gene

snRNA

Aliases for RNU5E-6P Gene

  • RNA, U5E Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU5E-6P Gene

ORGUL Members for RNU5E-6P Gene

Previous GeneCards Identifiers for RNU5E-6P Gene

  • GC00U933513
  • GC01M045287

Summaries for RNU5E-6P Gene

GeneCards Summary for RNU5E-6P Gene

RNU5E-6P (RNA, U5E Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU5E-6P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-6P Gene

Genomics for RNU5E-6P Gene

Regulatory Elements for RNU5E-6P Gene

Promoters for RNU5E-6P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5E-6P Gene

Chromosome:
1
Start:
44,819,883 bp from pter
End:
44,819,997 bp from pter
Size:
115 bases
Orientation:
Minus strand

Genomic View for RNU5E-6P Gene

Genes around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P gene

Proteins for RNU5E-6P Gene

Post-translational modifications for RNU5E-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-6P Gene

Domains & Families for RNU5E-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-6P Gene

Function for RNU5E-6P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-6P Gene

Localization for RNU5E-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5E-6P Gene

Pathways & Interactions for RNU5E-6P Gene

SuperPathways for RNU5E-6P Gene

No Data Available

Interacting Proteins for RNU5E-6P Gene

Gene Ontology (GO) - Biological Process for RNU5E-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5E-6P Gene

Drugs & Compounds for RNU5E-6P Gene

No Compound Related Data Available

Transcripts for RNU5E-6P Gene

mRNA/cDNA for RNU5E-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-6P Gene

No ASD Table

Relevant External Links for RNU5E-6P Gene

GeneLoc Exon Structure for
RNU5E-6P
ECgene alternative splicing isoforms for
RNU5E-6P

Expression for RNU5E-6P Gene

mRNA expression in normal human tissues for RNU5E-6P Gene

genes like me logo Genes that share expression patterns with RNU5E-6P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU5E-6P Gene

Orthologs for RNU5E-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU5E-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 36
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U5 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U5 36
  • 85 (a)
OneToMany
U5 36
  • 78 (a)
OneToMany
U5 36
  • 80 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 36
  • 66 (a)
ManyToMany
Species with no ortholog for RNU5E-6P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-6P Gene

ENSEMBL:
Gene Tree for RNU5E-6P (if available)
TreeFam:
Gene Tree for RNU5E-6P (if available)

Paralogs for RNU5E-6P Gene

No data available for Paralogs for RNU5E-6P Gene

Variants for RNU5E-6P Gene

Relevant External Links for RNU5E-6P Gene

HapMap Linkage Disequilibrium report
RNU5E-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-6P Gene

Disorders for RNU5E-6P Gene

No disorders were found for RNU5E-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5E-6P Gene

Publications for RNU5E-6P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M. … Bindereif A. (J. Biol. Chem. 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for RNU5E-6P Gene

Sources for RNU5E-6P Gene

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