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Aliases for RNU5E-6P Gene

Subcategory (RNA class) for RNU5E-6P Gene

snRNA

Aliases for RNU5E-6P Gene

  • RNA, U5E Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU5E-6P Gene

ORGUL Members for RNU5E-6P Gene

Previous GeneCards Identifiers for RNU5E-6P Gene

  • GC00U933513
  • GC01M045287

Summaries for RNU5E-6P Gene

GeneCards Summary for RNU5E-6P Gene

RNU5E-6P (RNA, U5E Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU5E-6P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

Additional gene information for RNU5E-6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-6P Gene

Genomics for RNU5E-6P Gene

Regulatory Elements for RNU5E-6P Gene

Enhancers for RNU5E-6P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H044818 1.4 ENCODE dbSUPER 0.7 +0.0 20 2.9 HNRNPUL1 HDGF PKNOX1 ARNT ZFP64 ARID4B YY1 SLC30A9 ZNF766 ZNF143 TOE1 GPBP1L1 MUTYH RPL7AP16 DMAP1 HECTD3 RPS8 NASP KIF2C BEST4
GH01H044825 1.5 Ensembl ENCODE dbSUPER 0.4 -6.8 -6754 2 HDGF MLX ARID4B DMAP1 GLIS2 ZNF143 SP5 ZHX2 MXD4 ZNF592 UROD BEST4 BTBD19 RNU5E-6P PTCH2
GH01H044805 1.4 ENCODE dbSUPER 0.4 +9.5 9547 10.7 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 TOE1 GPBP1L1 RPS8 HECTD3 ENSG00000225721 UROD MUTYH BEST4 SNORD38A SNORD46
GH01H044835 1.2 Ensembl ENCODE 0.4 -16.1 -16091 0.6 HDAC1 ELF3 PKNOX1 ATF1 RB1 TBL1XR1 ARNT ARID4B KLF17 RAD21 UROD PTCH2 RNU5E-6P
GH01H044830 0.8 dbSUPER 0.4 -11.1 -11100 1.4 CTCF KLF1 TAL1 NFRKB ZNF384 ZIC2 RAD21 RELA TCF12 POLR2A BTBD19 TCTEX1D4 PLK3 RPS8 BEST4 RNU5D-1 KIF2C EIF2B3 UROD PTCH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Promoters for RNU5E-6P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005800 97 1401 HNRNPUL1 HDGF PKNOX1 ARNT ZFP64 ARID4B FEZF1 YY1 SLC30A9 ZNF766

Genomic Locations for RNU5E-6P Gene

Genomic Locations for RNU5E-6P Gene
chr1:44,819,883-44,819,997
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand
chr1:45,285,555-45,285,669
(GRCh37/hg19)

Genomic View for RNU5E-6P Gene

Genes around RNU5E-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P Gene

ORGUL Member Location for RNU5E-6P gene

Proteins for RNU5E-6P Gene

Post-translational modifications for RNU5E-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-6P Gene

Domains & Families for RNU5E-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-6P Gene

Function for RNU5E-6P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-6P Gene

Localization for RNU5E-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5E-6P Gene

Pathways & Interactions for RNU5E-6P Gene

SuperPathways for RNU5E-6P Gene

No Data Available

Interacting Proteins for RNU5E-6P Gene

Gene Ontology (GO) - Biological Process for RNU5E-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5E-6P Gene

Drugs & Compounds for RNU5E-6P Gene

No Compound Related Data Available

Transcripts for RNU5E-6P Gene

mRNA/cDNA for RNU5E-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-6P Gene

No ASD Table

Relevant External Links for RNU5E-6P Gene

GeneLoc Exon Structure for
RNU5E-6P
ECgene alternative splicing isoforms for
RNU5E-6P

Expression for RNU5E-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5E-6P Gene

genes like me logo Genes that share expression patterns with RNU5E-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-6P Gene

Orthologs for RNU5E-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU5E-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U5 34 34 34
  • 85 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U5 34
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U5 34
  • 66 (a)
ManyToMany
Species where no ortholog for RNU5E-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-6P Gene

ENSEMBL:
Gene Tree for RNU5E-6P (if available)
TreeFam:
Gene Tree for RNU5E-6P (if available)

Paralogs for RNU5E-6P Gene

No data available for Paralogs for RNU5E-6P Gene

Variants for RNU5E-6P Gene

Relevant External Links for RNU5E-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5E-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-6P Gene

Disorders for RNU5E-6P Gene

No disorders were found for RNU5E-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5E-6P Gene

Publications for RNU5E-6P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU5E-6P Gene

Sources for RNU5E-6P Gene

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