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Aliases for RNU5E-10P Gene

Subcategory (RNA class) for RNU5E-10P Gene

snRNA

Aliases for RNU5E-10P Gene

  • RNA, U5E Small Nuclear 10, Pseudogene 2 3

External Ids for RNU5E-10P Gene

ORGUL Members for RNU5E-10P Gene

Summaries for RNU5E-10P Gene

GeneCards Summary for RNU5E-10P Gene

RNU5E-10P (RNA, U5E Small Nuclear 10, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

fRNAdb sequence ontologies for RNU5E-10P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

View fRNAdb secondary structures for RNU5E-10P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-10P Gene

Genomics for RNU5E-10P Gene

Genomic Location for RNU5E-10P Gene

Start:
47,576,471 bp from pter
End:
47,576,588 bp from pter
Size:
118 bases
Orientation:
Minus strand

Genomic View for RNU5E-10P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU5E-10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-10P Gene

ORGUL Member Location for RNU5E-10P Gene

ORGUL Member Location for RNU5E-10P gene

No data available for Regulatory Elements for RNU5E-10P Gene

Proteins for RNU5E-10P Gene

Post-translational modifications for RNU5E-10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-10P Gene

Domains for RNU5E-10P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU5E-10P Gene

Function for RNU5E-10P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU5E-10P Gene

Localization for RNU5E-10P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU5E-10P Gene

Pathways for RNU5E-10P Gene

SuperPathways for RNU5E-10P Gene

No Data Available

Interacting Proteins for RNU5E-10P Gene

Gene Ontology (GO) - Biological Process for RNU5E-10P Gene

None

No data available for Pathways by source for RNU5E-10P Gene

Transcripts for RNU5E-10P Gene

fRNAdb Secondary structures for RNU5E-10P Gene

  • RF00020;U5;AADC01097961.1/701-584

mRNA/cDNA for RNU5E-10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-10P Gene

No ASD Table

Relevant External Links for RNU5E-10P Gene

GeneLoc Exon Structure for
RNU5E-10P
ECgene alternative splicing isoforms for
RNU5E-10P

Expression for RNU5E-10P Gene

mRNA expression in normal human tissues for RNU5E-10P Gene

genes like me logo Genes that share expressions with RNU5E-10P: view

Orthologs for RNU5E-10P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-10P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 37
  • 70 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U5 37
  • 79 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 37
  • 56 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 37
  • 72 (a)
ManyToMany
Species with no ortholog for RNU5E-10P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-10P Gene

ENSEMBL:
Gene Tree for RNU5E-10P (if available)
TreeFam:
Gene Tree for RNU5E-10P (if available)

Paralogs for RNU5E-10P Gene

No data available for Paralogs for RNU5E-10P Gene

Variants for RNU5E-10P Gene

Relevant External Links for RNU5E-10P Gene

HapMap Linkage Disequilibrium report
RNU5E-10P

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNU5E-10P Gene

Disorders for RNU5E-10P Gene

No disorders were found for RNU5E-10P Gene.

No data available for UniProtKB/Swiss-Prot for RNU5E-10P Gene

Publications for RNU5E-10P Gene

No publications were found for RNU5E-10P Gene.

Products for RNU5E-10P Gene

Sources for RNU5E-10P Gene

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