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Aliases for RNU5E-10P Gene

Subcategory (RNA class) for RNU5E-10P Gene

snRNA

Aliases for RNU5E-10P Gene

  • RNA, U5E Small Nuclear 10, Pseudogene 2 3 5

External Ids for RNU5E-10P Gene

ORGUL Members for RNU5E-10P Gene

Previous GeneCards Identifiers for RNU5E-10P Gene

  • GC00U933064
  • GC11M047599
  • GC11M047708
  • GC11M048080
  • GC11M048803
  • GC11M049908
  • GC11M047829
  • GC11M047956
  • GC11M050804
  • GC11M051599
  • GC11M052261

Summaries for RNU5E-10P Gene

GeneCards Summary for RNU5E-10P Gene

RNU5E-10P (RNA, U5E Small Nuclear 10, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU5E-10P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

View fRNAdb secondary structures for RNU5E-10P

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-10P Gene

Genomics for RNU5E-10P Gene

Regulatory Elements for RNU5E-10P Gene

Enhancers for RNU5E-10P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G047506 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +63.0 63007 14.4 HDGF PKNOX1 WRNIP1 ZFP64 SIN3A FEZF1 ZNF2 FOS JUNB REST FNBP4 NUP160 ENSG00000200090 C1QTNF4 SLC39A13 CELF1 ENSG00000270060 DDB2 NDUFS3 PTPMT1
GH11G047550 1.7 FANTOM5 ENCODE dbSUPER 12.5 +24.4 24402 3.8 HDGF PKNOX1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 C1QTNF4 C11orf49 RNU5E-10P ENSG00000231880 KBTBD4 FNBP4 CELF1 PTPRJ NR1H3 SPI1
GH11G047537 1.4 Ensembl ENCODE dbSUPER 11.5 +37.2 37196 4.4 PKNOX1 INSM2 KLF17 SIN3A FEZF1 RAD21 ZNF2 GATA2 ZNF366 SCRT2 C1QTNF4 CELF1 PTPMT1 NDUFS3 KBTBD4 ENSG00000231880 RNU5E-10P MADD MTCH2 FNBP4
GH11G047521 1.4 Ensembl ENCODE dbSUPER 10.7 +52.4 52373 4.8 HDGF PKNOX1 SIN3A FEZF1 YY1 FOS DEK ZNF263 JUNB ZNF579 C1QTNF4 CELF1 NDUFS3 PTPMT1 FAM180B RNU5E-10P ENSG00000231880 C11orf49 ENSG00000270072 RN7SL652P
GH11G047498 1.2 Ensembl ENCODE dbSUPER 11.2 +77.1 77103 1.4 NFIB TAF1 WRNIP1 MAX RAD21 YY1 HNF4G PRDM10 MAFK FOXA1 NDUFS3 PTPMT1 CELF1 RAPSN ENSG00000231880 RNU5E-10P KBTBD4 FAM180B C1QTNF4 MTCH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5E-10P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5E-10P Gene

Chromosome:
11
Start:
47,576,471 bp from pter
End:
47,576,588 bp from pter
Size:
118 bases
Orientation:
Minus strand

Genomic View for RNU5E-10P Gene

Genes around RNU5E-10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-10P Gene

ORGUL Member Location for RNU5E-10P Gene

ORGUL Member Location for RNU5E-10P gene

Proteins for RNU5E-10P Gene

Post-translational modifications for RNU5E-10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-10P Gene

Domains & Families for RNU5E-10P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-10P Gene

Function for RNU5E-10P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-10P Gene

Localization for RNU5E-10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5E-10P Gene

Pathways & Interactions for RNU5E-10P Gene

SuperPathways for RNU5E-10P Gene

No Data Available

Interacting Proteins for RNU5E-10P Gene

Gene Ontology (GO) - Biological Process for RNU5E-10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5E-10P Gene

Drugs & Compounds for RNU5E-10P Gene

No Compound Related Data Available

Transcripts for RNU5E-10P Gene

fRNAdb Secondary structures for RNU5E-10P Gene

  • RF00020;U5;AADC01097961.1/701-584

mRNA/cDNA for RNU5E-10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-10P Gene

No ASD Table

Relevant External Links for RNU5E-10P Gene

GeneLoc Exon Structure for
RNU5E-10P
ECgene alternative splicing isoforms for
RNU5E-10P

Expression for RNU5E-10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5E-10P Gene

genes like me logo Genes that share expression patterns with RNU5E-10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-10P Gene

Orthologs for RNU5E-10P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-10P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U5 35
  • 79 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U5 35
  • 70 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 35
  • 56 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 35
  • 72 (a)
ManyToMany
Species where no ortholog for RNU5E-10P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-10P Gene

ENSEMBL:
Gene Tree for RNU5E-10P (if available)
TreeFam:
Gene Tree for RNU5E-10P (if available)

Paralogs for RNU5E-10P Gene

No data available for Paralogs for RNU5E-10P Gene

Variants for RNU5E-10P Gene

Relevant External Links for RNU5E-10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5E-10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-10P Gene

Disorders for RNU5E-10P Gene

No disorders were found for RNU5E-10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5E-10P Gene

Publications for RNU5E-10P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M. … Bindereif A. (J. Biol. Chem. 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for RNU5E-10P Gene

Sources for RNU5E-10P Gene

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