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Aliases for RNU5E-1 Gene

Subcategory (RNA class) for RNU5E-1 Gene

snRNA

Quality Score for this RNA gene is

5

Aliases for RNU5E-1 Gene

  • RNA, U5E Small Nuclear 1 2 3
  • RNA, U5E Small Nuclear 2
  • RNU5E 3
  • U5E 3

External Ids for RNU5E-1 Gene

ORGUL Members for RNU5E-1 Gene

Previous HGNC Symbols for RNU5E-1 Gene

  • RNU5E

Previous GeneCards Identifiers for RNU5E-1 Gene

  • GC01P011970

Summaries for RNU5E-1 Gene

GeneCards Summary for RNU5E-1 Gene

RNU5E-1 (RNA, U5E Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU5E-1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

View fRNAdb secondary structures for RNU5E-1

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-1 Gene

Genomics for RNU5E-1 Gene

Genomic Location for RNU5E-1 Gene

Start:
11,908,152 bp from pter
End:
11,908,272 bp from pter
Size:
121 bases
Orientation:
Plus strand

Genomic View for RNU5E-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU5E-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-1 Gene

ORGUL Member Location for RNU5E-1 Gene

ORGUL Member Location for RNU5E-1 gene

No data available for Regulatory Elements for RNU5E-1 Gene

Proteins for RNU5E-1 Gene

Post-translational modifications for RNU5E-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-1 Gene

Domains for RNU5E-1 Gene

Gene Families for RNU5E-1 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5E-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-1 Gene

Function for RNU5E-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU5E-1 Gene

Localization for RNU5E-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5E-1 Gene

Pathways for RNU5E-1 Gene

SuperPathways for RNU5E-1 Gene

No Data Available

Interacting Proteins for RNU5E-1 Gene

Gene Ontology (GO) - Biological Process for RNU5E-1 Gene

None

No data available for Pathways by source for RNU5E-1 Gene

Transcripts for RNU5E-1 Gene

fRNAdb Secondary structures for RNU5E-1 Gene

  • RF00020;U5;AEKP01163184.1/2624-2743

mRNA/cDNA for RNU5E-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-1 Gene

No ASD Table

Relevant External Links for RNU5E-1 Gene

GeneLoc Exon Structure for
RNU5E-1
ECgene alternative splicing isoforms for
RNU5E-1

Expression for RNU5E-1 Gene

mRNA expression in normal human tissues for RNU5E-1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with RNU5E-1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNU5E-1 Gene

Orthologs for RNU5E-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 36
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U5 36
  • 90 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23143 36
  • 87 (a)
ManyToMany
Gm23287 36
  • 88 (a)
ManyToMany
Gm24871 36
  • 91 (a)
ManyToMany
Gm25099 36
  • 89 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U5 36
  • 87 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 36
  • 88 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 36
  • 81 (a)
ManyToMany
Species with no ortholog for RNU5E-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-1 Gene

ENSEMBL:
Gene Tree for RNU5E-1 (if available)
TreeFam:
Gene Tree for RNU5E-1 (if available)

Paralogs for RNU5E-1 Gene

No data available for Paralogs for RNU5E-1 Gene

Variants for RNU5E-1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU5E-1 Gene

Variant ID Type Subtype PubMed ID
nsv4898 CNV Insertion 18451855
nsv819322 CNV Loss 19587683
esv2730381 CNV Deletion 23290073
esv2661818 CNV Deletion 23128226
esv2730382 CNV Deletion 23290073

Relevant External Links for RNU5E-1 Gene

HapMap Linkage Disequilibrium report
RNU5E-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RNU5E-1 Gene

Disorders for RNU5E-1 Gene

No disorders were found for RNU5E-1 Gene.

No data available for UniProtKB/Swiss-Prot for RNU5E-1 Gene

Publications for RNU5E-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer E.J. … Steitz J.A. (Mol. Cell. Biol. 1992) 2 3

Products for RNU5E-1 Gene

Sources for RNU5E-1 Gene

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