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RNU5D-2P Gene(Pseudogene)

RNA, U5D Small Nuclear 2, Pseudogene

GCID:
GC09P132447
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RNU5D-2P Gene

Aliases for RNU5D-2P Gene

  • RNA, U5D Small Nuclear 2, Pseudogene 2 3 5

External Ids for RNU5D-2P Gene

Previous GeneCards Identifiers for RNU5D-2P Gene

  • GC00U933153
  • GC09P135300
  • GC09P132425
  • GC09P132426
  • GC09P132430
  • GC09P132433
  • GC09P132436
  • GC09P132439
  • GC09P132443

Summaries for RNU5D-2P Gene

GeneCards Summary for RNU5D-2P Gene

RNU5D-2P (RNA, U5D Small Nuclear 2, Pseudogene) is a Pseudogene.

Additional gene information for RNU5D-2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5D-2P Gene

Genomics for RNU5D-2P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNU5D-2P Gene

Promoters and enhancers for RNU5D-2P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I132381 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -38.4 -38350 3.9 CTCF PKNOX1 EBF1 BATF YY1 RELA POLR2A NFATC1 ZNF143 ATF7 SETX TTF1 RNU5D-2P PIR62838 GC09P132358
GH09I132780 Enhancer 1 Ensembl ENCODE 10.3 +359.2 359181 1.2 HDAC1 ATF1 ARNT NFRKB EGR1 FOS CREM JUNB ELF1 ZNF148 AK8 SPACA9 RNU5D-2P TTF1 PIR47443
GH09I132259 Enhancer 1 Ensembl ENCODE 10 -162.3 -162266 0.5 RB1 SIN3A RAD21 EGR1 ZNF143 RCOR1 ATF7 BCLAF1 RUNX3 CREM NTNG2 TTF1 RNU5D-2P MED27 SETX GC09M132284
GH09I132141 Enhancer 1 FANTOM5 ENCODE dbSUPER 10 -279.9 -279873 0.9 CEBPB PYGO2 CEBPG EP300 ZIC2 ZNF335 ZKSCAN8 ZBTB20 EZH2 RNU5D-2P NTNG2 LOC105376302
GH09I132459 Enhancer 0.5 FANTOM5 11.7 +38.4 38436 0.2 ZFHX2 NFATC1 TSC22D4 EGR2 RNU5D-2P CFAP77 BARHL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5D-2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5D-2P Gene

Genomic Locations for RNU5D-2P Gene
chr9:132,421,641-132,421,690
(GRCh38/hg38)
Size:
50 bases
Orientation:
Plus strand
chr9:135,297,028-135,297,077
(GRCh37/hg19)

Genomic View for RNU5D-2P Gene

Genes around RNU5D-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5D-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5D-2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU5D-2P Gene

Proteins for RNU5D-2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU5D-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5D-2P Gene

Domains & Families for RNU5D-2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5D-2P Gene

Function for RNU5D-2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU5D-2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5D-2P Gene

Localization for RNU5D-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5D-2P Gene

Pathways & Interactions for RNU5D-2P Gene

SuperPathways for RNU5D-2P Gene

PathCards logo More details on SuperPathways for RNU5D-2P
No Data Available

Interacting Proteins for RNU5D-2P Gene

Gene Ontology (GO) - Biological Process for RNU5D-2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5D-2P Gene

Drugs & Compounds for RNU5D-2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU5D-2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU5D-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5D-2P Gene

No ASD Table

Relevant External Links for RNU5D-2P Gene

GeneLoc Exon Structure for
RNU5D-2P
ECgene alternative splicing isoforms for
RNU5D-2P

Expression for RNU5D-2P Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5D-2P Gene

Orthologs for RNU5D-2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5D-2P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia U5 34
  • 60 (a)
 ManyToMany
chimpanzee
(Pan troglodytes)
 Mammalia U5 34
  • 35 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia U5 34
  • 93 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii U5 34 34
  • 38 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea U5 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 36 (a)
 ManyToMany
Species where no ortholog for RNU5D-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU5D-2P Gene

ENSEMBL:
Gene Tree for RNU5D-2P (if available)
TreeFam:
Gene Tree for RNU5D-2P (if available)

Paralogs for RNU5D-2P Gene

No data available for Paralogs for RNU5D-2P Gene

Variants for RNU5D-2P Gene

Additional Variant Information for RNU5D-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5D-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5D-2P Gene

Disorders for RNU5D-2P Gene

No disorders were found for RNU5D-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5D-2P Gene

Publications for RNU5D-2P Gene

No publications were found for RNU5D-2P Gene.

Products for RNU5D-2P Gene

Sources for RNU5D-2P Gene

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