Aliases for RNU5D-2P Gene
External Ids for RNU5D-2P Gene
- HGNC: 42534
- Entrez Gene: 100873841
- Ensembl: ENSG00000252521
Previous GeneCards Identifiers for RNU5D-2P Gene
- GC00U933153
- GC09P135300
- GC09P132425
- GC09P132426
- GC09P132430
- GC09P132433
- GC09P132436
Summaries for RNU5D-2P Gene
GeneCards Summary for RNU5D-2P Gene
RNU5D-2P (RNA, U5D Small Nuclear 2, Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5D-2P Gene
Genomics for RNU5D-2P Gene
Regulatory Elements for RNU5D-2P Gene
Enhancers for RNU5D-2P Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH09G132381 | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 10.6 | -38.4 | -38350 | 3.9 | TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A RFX5 YY1 GLIS2 ZNF143 RELB | SETX TSC1 TTF1 RNU5D-2P PIR62838 GC09P132358 |
| GH09G132259 | 1.2 | Ensembl ENCODE | 10 | -162.3 | -162266 | 0.5 | CBX3 RB1 NFIB SIN3A RAD21 EGR1 ZNF143 RCOR1 KLF13 CREM | NTNG2 TTF1 RNU5D-2P MED27 SETX GC09M132284 |
| GH09G132141 | 1.2 | FANTOM5 ENCODE dbSUPER | 10 | -279.9 | -279874 | 0.9 | SUZ12 NRF1 CEBPB CEBPG RBBP5 EP300 ZIC2 ZKSCAN8 ZBTB20 EZH2 | RNU5D-2P NTNG2 LOC105376302 |
| GH09G132780 | 1.1 | Ensembl ENCODE | 10.3 | +359.2 | 359182 | 1.2 | HDAC1 ATF1 CREB3L1 ARNT NFRKB EGR1 FOS RELB CREM JUNB | AK8 SPACA9 RNU5D-2P TTF1 PIR47443 |
| GH09G132630 | 0.9 | ENCODE | 10.3 | +209.7 | 209741 | 1.7 | HDAC1 ATF1 NFRKB AGO1 ZSCAN4 ZBTB40 RARA EGR1 ELK1 SCRT2 | DDX31 BARHL1 RNU5D-2P RNU7-21P RPL39P24 GC09P132620 GTF3C4 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around RNU5D-2P on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for RNU5D-2P Gene
- Chromosome:
- 9
- Start:
- 132,421,641 bp from pter
- End:
- 132,421,690 bp from pter
- Size:
- 50 bases
- Orientation:
- Plus strand
Genomic View for RNU5D-2P Gene
Genes around RNU5D-2P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 9q34.13 by Ensembl
- 9q34.13 by Entrez Gene
- 9q34.13 by HGNC
RNU5D-2P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNU5D-2P Gene
Proteins for RNU5D-2P Gene
Post-translational modifications for RNU5D-2P Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for RNU5D-2P
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU5D-2P
- Origene Custom Protein Services for RNU5D-2P
- Search GeneTex for Proteins for RNU5D-2P
No data available for DME Specific Peptides for RNU5D-2P Gene
Domains & Families for RNU5D-2P Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5D-2P Gene
Function for RNU5D-2P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU5D-2P
-
- Search ViGene Biosciences for RNU5D-2P
CRISPR Products
- Browse CRISPR knockouts for RNU5D-2P
miRNA Products
- Search ViGene Biosciences for RNU5D-2P
Inhibitory RNA Products
- Search ViGene Biosciences for RNU5D-2P
Clone Products
- GenScript: Custom all cDNA clones Services for RNU5D-2P
- VectorBuilder custom plasmid, inducible vectors for RNU5D-2P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU5D-2P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5D-2P Gene
Localization for RNU5D-2P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5D-2P Gene
Transcripts for RNU5D-2P Gene
mRNA/cDNA for RNU5D-2P Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for RNU5D-2P
miRNA Products
- Search ViGene Biosciences for RNU5D-2P
Inhibitory RNA Products
- Search ViGene Biosciences for RNU5D-2P
Clone Products
- GenScript: Custom all cDNA clones Services for RNU5D-2P
- VectorBuilder custom plasmid, inducible vectors for RNU5D-2P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU5D-2P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for RNU5D-2P Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5D-2P Gene
Orthologs for RNU5D-2P Gene
This gene was present in the common ancestor of chordates.
- Species where no ortholog for RNU5D-2P was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for RNU5D-2P Gene
No data available for Paralogs for RNU5D-2P Gene
Variants for RNU5D-2P Gene
Relevant External Links for RNU5D-2P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNU5D-2P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5D-2P Gene
Disorders for RNU5D-2P Gene
No disorders were found for RNU5D-2P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5D-2P Gene
Publications for RNU5D-2P Gene
No publications were found for RNU5D-2P Gene.
Products for RNU5D-2P Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU5D-2P
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNU5D-2P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNU5D-2P
- GenScript: Custom all cDNA clones Services for RNU5D-2P
- GenScript Custom Purified and Recombinant Proteins Services for RNU5D-2P
- GenScript Custom Assay Services for RNU5D-2P
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- Browse GenScript CRISPR for RNU5D-2P
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
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- Plasmid Preparation
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- Sino Biological Antibodies
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- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search GeneTex for Antibodies for RNU5D-2P
- Search GeneTex for Proteins for RNU5D-2P
- Search ViGene Biosciences for RNU5D-2P
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU5D-2P
- VectorBuilder custom plasmid, inducible vectors for RNU5D-2P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU5D-2P
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for RNU5D-2P Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer