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Aliases for RNU5D-1 Gene

Subcategory (RNA class) for RNU5D-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU5D-1 Gene

  • RNA, U5D Small Nuclear 1 2 3 5
  • RNA, U5D Small Nuclear 2
  • RNU5D 3
  • U5DL 3
  • U5DS 3

External Ids for RNU5D-1 Gene

ORGUL Members for RNU5D-1 Gene

Previous HGNC Symbols for RNU5D-1 Gene

  • RNU5D

Previous GeneCards Identifiers for RNU5D-1 Gene

  • GC01M045198

Summaries for RNU5D-1 Gene

GeneCards Summary for RNU5D-1 Gene

RNU5D-1 (RNA, U5D Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5D-1 Gene

Genomics for RNU5D-1 Gene

Regulatory Elements for RNU5D-1 Gene

Enhancers for RNU5D-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F044706 1.1 Ensembl ENCODE 11.5 +23.7 23660 2.6 ATF1 MLX ARID4B DMAP1 YY1 ZNF121 SLC30A9 ZNF143 FOS ZNF263 DMAP1 C1orf228 TMEM53 RNU5D-1 TOE1 KIF2C ZSWIM5 RNF220 UROD GC01P044699
GH01F044829 0.7 Ensembl 11.1 -99.9 -99931 3.4 TBP ARID4B THRB DNMT3B RAD21 RARA CREM MIXL1 CEBPB KAT8 BEST4 TCTEX1D4 BTBD19 PLK3 RPS8 RNU5D-1 KIF2C EIF2B3 ENSG00000232369 UROD
GH01F044835 1.3 Ensembl ENCODE 11.1 -104.8 -104832 0.8 ELF3 HDAC1 ATF1 PKNOX1 CBX3 TBL1XR1 ARNT KLF17 ARID4B RAD21 UROD BTBD19 TCTEX1D4 PLK3 BEST4 RNU5D-1 KIF2C EIF2B3 ENSG00000232369 PTCH2
GH01F044833 0.6 Ensembl 11.1 -103.1 -103131 1.0 ELF3 CTCF HDAC1 CBX3 CREB3L1 ARID4B BACH1 UBTF CEBPG RAD21 BEST4 BTBD19 TCTEX1D4 PLK3 UROD RNU5D-1 KIF2C EIF2B3 ENSG00000232369 PTCH2
GH01F044732 0.6 Ensembl ENCODE 0.8 -2.4 -2352 1.4 BCOR ZNF692 PRDM10 ZNF644 ZNF7 GC01M044732 RNU5D-1 PIR60865
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU5D-1 on UCSC Golden Path with GeneCards custom track

Promoters for RNU5D-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001519805 -30 801 CREB3L1 YBX1 FEZF1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D ZNF610

Genomic Location for RNU5D-1 Gene

Chromosome:
1
Start:
44,731,055 bp from pter
End:
44,731,170 bp from pter
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNU5D-1 Gene

Genes around RNU5D-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5D-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5D-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5D-1 Gene

Proteins for RNU5D-1 Gene

Post-translational modifications for RNU5D-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5D-1 Gene

Domains & Families for RNU5D-1 Gene

Gene Families for RNU5D-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5D-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5D-1 Gene

Function for RNU5D-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5D-1 Gene

Localization for RNU5D-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5D-1 Gene

Pathways & Interactions for RNU5D-1 Gene

SuperPathways for RNU5D-1 Gene

No Data Available

Interacting Proteins for RNU5D-1 Gene

Gene Ontology (GO) - Biological Process for RNU5D-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5D-1 Gene

Transcripts for RNU5D-1 Gene

mRNA/cDNA for RNU5D-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5D-1 Gene

No ASD Table

Relevant External Links for RNU5D-1 Gene

GeneLoc Exon Structure for
RNU5D-1
ECgene alternative splicing isoforms for
RNU5D-1

Expression for RNU5D-1 Gene

mRNA expression in normal human tissues for RNU5D-1 Gene

genes like me logo Genes that share expression patterns with RNU5D-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU5D-1 Gene

Orthologs for RNU5D-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5D-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 35
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 35
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U5 35
  • 83 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U5 35
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24871 35
  • 82 (a)
ManyToMany
Gm25099 35
  • 82 (a)
ManyToMany
Gm23287 35
  • 80 (a)
ManyToMany
Gm23143 35
  • 79 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 35
  • 82 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 35
  • 84 (a)
ManyToMany
Species where no ortholog for RNU5D-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5D-1 Gene

ENSEMBL:
Gene Tree for RNU5D-1 (if available)
TreeFam:
Gene Tree for RNU5D-1 (if available)

Paralogs for RNU5D-1 Gene

No data available for Paralogs for RNU5D-1 Gene

Variants for RNU5D-1 Gene

Sequence variations from dbSNP and Humsavar for RNU5D-1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs11211028 -- 44,730,902(+) tgcTC(A/G)CTACA downstream-variant-500B
rs112121804 -- 44,731,312(+) AAAAG(A/G)GGGGG upstream-variant-2KB
rs112355581 -- 44,731,156(+) TTGAA(A/G)AGAAA nc-transcript-variant
rs112510843 -- 44,731,101(+) CAAAA(C/T)GGTTT nc-transcript-variant
rs112611377 -- 44,731,153(+) GATTT(A/G)AAGAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RNU5D-1 Gene

Variant ID Type Subtype PubMed ID
nsv998871 CNV loss 25217958

Relevant External Links for RNU5D-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5D-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU5D-1 Gene

Disorders for RNU5D-1 Gene

Relevant External Links for RNU5D-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU5D-1

No disorders were found for RNU5D-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5D-1 Gene

Publications for RNU5D-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer E.J. … Steitz J.A. (Mol. Cell. Biol. 1992) 2 3 64

Products for RNU5D-1 Gene

Sources for RNU5D-1 Gene

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