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Aliases for RNU5B-4P Gene

Subcategory (RNA class) for RNU5B-4P Gene

snRNA

Aliases for RNU5B-4P Gene

  • RNA, U5B Small Nuclear 4, Pseudogene 2 3 5

External Ids for RNU5B-4P Gene

ORGUL Members for RNU5B-4P Gene

Previous GeneCards Identifiers for RNU5B-4P Gene

  • GC05U901008
  • GC05P138783
  • GC05P133973

Summaries for RNU5B-4P Gene

GeneCards Summary for RNU5B-4P Gene

RNU5B-4P (RNA, U5B Small Nuclear 4, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5B-4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5B-4P Gene

Genomics for RNU5B-4P Gene

Regulatory Elements for RNU5B-4P Gene

Enhancers for RNU5B-4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H139413 1 Ensembl ENCODE 13.2 -30.9 -30858 6.6 CTCF SMARCA5 ZNF362 HLF ZNF175 FEZF1 REST RAD21 NR2F2 NFIC DNAJC18 RNU5B-4P ECSCR PROB1 MZB1 SLC23A1 PAIP2 SIL1 MATR3 GC05P139409
GH05H139503 0.9 ENCODE 12.8 +56.1 56086 1.5 PKNOX1 ARNT ARID4B ZNF143 ATF7 NFYC PPARG ZNF592 KAT8 MBD2 ECSCR RNU5B-4P DNAJC18 PIR33843 UBE2D2
GH05H139422 0.8 ENCODE 13.2 -25.4 -25421 0.2 CTCF RB1 ARID4B KLF17 MAX ZNF2 ZSCAN9 RAD21 RFX5 CC2D1A DNAJC18 RNU5B-4P ECSCR PROB1 MZB1 SLC23A1 PAIP2 SIL1 MATR3 GC05P139409
GH05H139426 0.4 ENCODE 13.3 -21.3 -21278 1.2 CTBP1 ZMYM3 DNAJC18 RNU5B-4P ECSCR GC05P139409 GC05P139410
GH05H139457 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.5 12547 5.6 HDGF FOXA2 BATF ZNF121 ATF7 RUNX3 CREM IKZF2 SMARCA5 CBFB DNAJC18 PURA ECSCR TMEM173 ENSG00000279686 RNU5B-4P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5B-4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5B-4P Gene

Genomic Locations for RNU5B-4P Gene
chr5:139,447,907-139,448,018
(GRCh38/hg38)
Size:
112 bases
Orientation:
Plus strand
chr5:138,783,596-138,783,707
(GRCh37/hg19)

Genomic View for RNU5B-4P Gene

Genes around RNU5B-4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5B-4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5B-4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5B-4P Gene

Proteins for RNU5B-4P Gene

Post-translational modifications for RNU5B-4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5B-4P Gene

Domains & Families for RNU5B-4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5B-4P Gene

Function for RNU5B-4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5B-4P Gene

Localization for RNU5B-4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5B-4P Gene

Pathways & Interactions for RNU5B-4P Gene

SuperPathways for RNU5B-4P Gene

No Data Available

Interacting Proteins for RNU5B-4P Gene

Gene Ontology (GO) - Biological Process for RNU5B-4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5B-4P Gene

Drugs & Compounds for RNU5B-4P Gene

No Compound Related Data Available

Transcripts for RNU5B-4P Gene

mRNA/cDNA for RNU5B-4P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5B-4P Gene

No ASD Table

Relevant External Links for RNU5B-4P Gene

GeneLoc Exon Structure for
RNU5B-4P
ECgene alternative splicing isoforms for
RNU5B-4P

Expression for RNU5B-4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5B-4P Gene

genes like me logo Genes that share expression patterns with RNU5B-4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5B-4P Gene

Orthologs for RNU5B-4P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU5B-4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 100 (a)
OneToOne
Species where no ortholog for RNU5B-4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5B-4P Gene

ENSEMBL:
Gene Tree for RNU5B-4P (if available)
TreeFam:
Gene Tree for RNU5B-4P (if available)

Paralogs for RNU5B-4P Gene

No data available for Paralogs for RNU5B-4P Gene

Variants for RNU5B-4P Gene

Relevant External Links for RNU5B-4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5B-4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5B-4P Gene

Disorders for RNU5B-4P Gene

No disorders were found for RNU5B-4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5B-4P Gene

Publications for RNU5B-4P Gene

No publications were found for RNU5B-4P Gene.

Products for RNU5B-4P Gene

Sources for RNU5B-4P Gene

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