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Aliases for RNU5B-4P Gene

Subcategory (RNA class) for RNU5B-4P Gene

snRNA

Aliases for RNU5B-4P Gene

  • RNA, U5B Small Nuclear 4, Pseudogene 2 3 5

External Ids for RNU5B-4P Gene

ORGUL Members for RNU5B-4P Gene

Previous GeneCards Identifiers for RNU5B-4P Gene

  • GC05U901008
  • GC05P138783
  • GC05P133973

Summaries for RNU5B-4P Gene

GeneCards Summary for RNU5B-4P Gene

RNU5B-4P (RNA, U5B Small Nuclear 4, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5B-4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5B-4P Gene

Genomics for RNU5B-4P Gene

GeneHancer (GH) Regulatory Elements for RNU5B-4P Gene

Promoters and enhancers for RNU5B-4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I139413 Enhancer 0.9 Ensembl ENCODE 13.2 -30.9 -30857 6.6 CTCF FEZF1 RAD21 IKZF2 EZH2 SMARCA5 ZNF362 HLF REST EP300 DNAJC18 RNU5B-4P ECSCR PROB1 MZB1 SLC23A1 PAIP2 SIL1 MATR3 GC05P139409
GH05I139503 Enhancer 0.9 ENCODE 12.8 +56.1 56086 1.5 PKNOX1 ARNT ARID4B ZNF48 POLR2B ATF7 RXRA NCOA1 NFYC PPARG ECSCR RNU5B-4P DNAJC18 PIR33843 UBE2D2 GC05M139466 GC05P138946
GH05I139422 Enhancer 0.8 ENCODE 13.2 -25.4 -25420 0.2 RB1 ARID4B KLF17 SIN3A ZNF2 ZSCAN9 RAD21 RFX5 ZNF213 ARID2 DNAJC18 RNU5B-4P ECSCR PROB1 MZB1 SLC23A1 PAIP2 SIL1 MATR3 GC05P139410
GH05I139426 Enhancer 0.5 ENCODE 13.3 -21.3 -21278 1.2 CTBP1 TEAD4 CBFA2T3 ZMYM3 DNAJC18 RNU5B-4P ECSCR GC05P139409 GC05P139410 GC05P138946
GH05I139443 Enhancer 1.1 Ensembl ENCODE 0.8 -2.3 -2305 4.6 PKNOX1 ATF1 KLF17 BMI1 BATF KLF5 IRF4 ZBTB40 ZNF366 SCRT2 DNAJC18 IGIP MATR3 LRRTM2 PURA MALINC1 GC05P139448 RNU5B-4P ENSG00000279686 GC05P138946
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5B-4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5B-4P Gene

Genomic Locations for RNU5B-4P Gene
chr5:139,447,907-139,448,018
(GRCh38/hg38)
Size:
112 bases
Orientation:
Plus strand
chr5:138,783,596-138,783,707
(GRCh37/hg19)

Genomic View for RNU5B-4P Gene

Genes around RNU5B-4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5B-4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5B-4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5B-4P Gene

Proteins for RNU5B-4P Gene

Post-translational modifications for RNU5B-4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5B-4P Gene

Domains & Families for RNU5B-4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5B-4P Gene

Function for RNU5B-4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5B-4P Gene

Localization for RNU5B-4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5B-4P Gene

Pathways & Interactions for RNU5B-4P Gene

SuperPathways for RNU5B-4P Gene

No Data Available

Interacting Proteins for RNU5B-4P Gene

Gene Ontology (GO) - Biological Process for RNU5B-4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5B-4P Gene

Drugs & Compounds for RNU5B-4P Gene

No Compound Related Data Available

Transcripts for RNU5B-4P Gene

mRNA/cDNA for RNU5B-4P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5B-4P Gene

No ASD Table

Relevant External Links for RNU5B-4P Gene

GeneLoc Exon Structure for
RNU5B-4P
ECgene alternative splicing isoforms for
RNU5B-4P

Expression for RNU5B-4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5B-4P Gene

genes like me logo Genes that share expression patterns with RNU5B-4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5B-4P Gene

Orthologs for RNU5B-4P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU5B-4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 100 (a)
OneToOne
Species where no ortholog for RNU5B-4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5B-4P Gene

ENSEMBL:
Gene Tree for RNU5B-4P (if available)
TreeFam:
Gene Tree for RNU5B-4P (if available)

Paralogs for RNU5B-4P Gene

No data available for Paralogs for RNU5B-4P Gene

Variants for RNU5B-4P Gene

Additional Variant Information for RNU5B-4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5B-4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5B-4P Gene

Disorders for RNU5B-4P Gene

No disorders were found for RNU5B-4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5B-4P Gene

Publications for RNU5B-4P Gene

No publications were found for RNU5B-4P Gene.

Products for RNU5B-4P Gene

Sources for RNU5B-4P Gene

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