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Aliases for RNU5B-3P Gene

Subcategory (RNA class) for RNU5B-3P Gene

snRNA

Aliases for RNU5B-3P Gene

  • RNA, U5B Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU5B-3P Gene

ORGUL Members for RNU5B-3P Gene

Previous GeneCards Identifiers for RNU5B-3P Gene

  • GC03U900991

Summaries for RNU5B-3P Gene

GeneCards Summary for RNU5B-3P Gene

RNU5B-3P (RNA, U5B Small Nuclear 3, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5B-3P Gene

Genomics for RNU5B-3P Gene

Regulatory Elements for RNU5B-3P Gene

Enhancers for RNU5B-3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F044992 0.8 FANTOM5 Ensembl ENCODE 11.1 +39.9 39875 5.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF143 EXOSC7 ZDHHC3 RN7SL145P RNU5B-3P ZNF35 CLEC3B LIMD1 ENSG00000202268 ZNF502 ZNF660
GH03F045052 1.5 FANTOM5 Ensembl ENCODE 11 -25.4 -25355 14.5 HDGF PKNOX1 ARNT CREB3L1 YY1 ZNF766 FOS KLF13 REST TBX21 EXOSC7 LIMD1 CLEC3B CDCP1 XCR1 ZNF660 SACM1L RN7SL145P RNU5B-3P TMEM158
GH03F045067 0.5 FANTOM5 10.8 -33.3 -33303 0.2 RFX1 ADNP CDCP1 RNU5B-3P CLEC3B TMEM158 ENSG00000202268 LOC105377059
GH03F044979 0.7 Ensembl ENCODE 10.7 +52.1 52089 5.4 HDGF PKNOX1 KLF1 WRNIP1 TAL1 FEZF1 NCOR1 GATA2 TRIM24 FOS EXOSC7 ZNF660 RNU5B-3P ENSG00000235845 TGM4 TMEM42 ZDHHC3 CLEC3B
GH03F045130 1.8 FANTOM5 Ensembl ENCODE 10.7 -101.4 -101403 11.1 HDGF PKNOX1 ARNT CREB3L1 SIN3A FEZF1 CBX5 FOS KLF13 JUNB SACM1L ZNF660 ZNF502 ENSG00000272077 LINC00694 ZNF197-AS1 ZKSCAN7 ZNF501 RNU5B-3P CLEC3B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU5B-3P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5B-3P Gene

Chromosome:
3
Start:
45,034,474 bp from pter
End:
45,034,589 bp from pter
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNU5B-3P Gene

Genes around RNU5B-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5B-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5B-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5B-3P Gene

Proteins for RNU5B-3P Gene

Post-translational modifications for RNU5B-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5B-3P Gene

Domains & Families for RNU5B-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5B-3P Gene

Function for RNU5B-3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5B-3P Gene

Localization for RNU5B-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5B-3P Gene

Pathways & Interactions for RNU5B-3P Gene

SuperPathways for RNU5B-3P Gene

No Data Available

Interacting Proteins for RNU5B-3P Gene

Gene Ontology (GO) - Biological Process for RNU5B-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5B-3P Gene

Transcripts for RNU5B-3P Gene

mRNA/cDNA for RNU5B-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5B-3P Gene

No ASD Table

Relevant External Links for RNU5B-3P Gene

GeneLoc Exon Structure for
RNU5B-3P
ECgene alternative splicing isoforms for
RNU5B-3P

Expression for RNU5B-3P Gene

mRNA expression in normal human tissues for RNU5B-3P Gene

genes like me logo Genes that share expression patterns with RNU5B-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU5B-3P Gene

Orthologs for RNU5B-3P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5B-3P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 35
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 35
  • 65 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 35
  • 48 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii U5 35 35 35 35 35 35 35
  • 55 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U5 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 50 (a)
ManyToMany
Species where no ortholog for RNU5B-3P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU5B-3P Gene

ENSEMBL:
Gene Tree for RNU5B-3P (if available)
TreeFam:
Gene Tree for RNU5B-3P (if available)

Paralogs for RNU5B-3P Gene

No data available for Paralogs for RNU5B-3P Gene

Variants for RNU5B-3P Gene

Relevant External Links for RNU5B-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5B-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5B-3P Gene

Disorders for RNU5B-3P Gene

No disorders were found for RNU5B-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5B-3P Gene

Publications for RNU5B-3P Gene

No publications were found for RNU5B-3P Gene.

Products for RNU5B-3P Gene

Sources for RNU5B-3P Gene

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