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Aliases for RNU5A-8P Gene

Subcategory (RNA class) for RNU5A-8P Gene

snRNA

Aliases for RNU5A-8P Gene

  • RNA, U5A Small Nuclear 8, Pseudogene 2 3 5

External Ids for RNU5A-8P Gene

ORGUL Members for RNU5A-8P Gene

Previous GeneCards Identifiers for RNU5A-8P Gene

  • GC00U933400
  • GC01M210551

Summaries for RNU5A-8P Gene

GeneCards Summary for RNU5A-8P Gene

RNU5A-8P (RNA, U5A Small Nuclear 8, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-8P Gene

Genomics for RNU5A-8P Gene

Regulatory Elements for RNU5A-8P Gene

Enhancers for RNU5A-8P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F210342 1.1 Ensembl ENCODE 11.8 +30.7 30679 1.2 HDGF PKNOX1 YBX1 BMI1 ZNF2 ZNF366 EGR2 REST ZEB2 TBX21 SERTAD4-AS1 RNU5A-8P SERTAD4 HHAT PIR50724
GH01F210340 0.6 Ensembl 11.8 +33.5 33467 0.4 ZNF664 MTA2 IKZF1 NBN MAX FEZF1 EBF1 TBX21 RNU5A-8P SERTAD4 SERTAD4-AS1 DIEXF HHAT PIR50724
GH01F210371 1.4 Ensembl ENCODE 0.8 +0.6 605 3.4 PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 RCOR3 SERTAD4-AS1 SERTAD4 ST13P19 HHAT GC01M210375 RNU5A-8P PIR50724
GH01F210392 1.5 FANTOM5 Ensembl ENCODE 0.3 -19.9 -19938 2.5 HDGF TBP PKNOX1 SIN3A BMI1 THRB ZNF207 FOS MIXL1 TBX21 SERTAD4-AS1 SERTAD4 HHAT SYT14 GC01M210375 RNU5A-8P LOC100421537
GH01F210376 0.5 ENCODE 0.8 -3.8 -3814 3.2 PKNOX1 JUND ZBTB17 HHAT GC01M210375 RNU5A-8P LOC100421537
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5A-8P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5A-8P Gene

Chromosome:
1
Start:
210,374,154 bp from pter
End:
210,374,267 bp from pter
Size:
114 bases
Orientation:
Minus strand

Genomic View for RNU5A-8P Gene

Genes around RNU5A-8P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-8P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-8P Gene

Proteins for RNU5A-8P Gene

Post-translational modifications for RNU5A-8P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-8P Gene

Domains & Families for RNU5A-8P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-8P Gene

Function for RNU5A-8P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-8P Gene

Localization for RNU5A-8P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5A-8P Gene

Pathways & Interactions for RNU5A-8P Gene

SuperPathways for RNU5A-8P Gene

No Data Available

Interacting Proteins for RNU5A-8P Gene

Gene Ontology (GO) - Biological Process for RNU5A-8P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5A-8P Gene

Transcripts for RNU5A-8P Gene

mRNA/cDNA for RNU5A-8P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-8P Gene

No ASD Table

Relevant External Links for RNU5A-8P Gene

GeneLoc Exon Structure for
RNU5A-8P
ECgene alternative splicing isoforms for
RNU5A-8P

Expression for RNU5A-8P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU5A-8P Gene

genes like me logo Genes that share expression patterns with RNU5A-8P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU5A-8P Gene

Orthologs for RNU5A-8P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5A-8P Gene

Organism Taxonomy Gene Similarity Type Details
platypus
(Ornithorhynchus anatinus)
Mammalia U5 35
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U5 35 35
  • 72 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U5 35
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves U5 35 35 35 35 35 35
  • 71 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U5 35
  • 52 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U5 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 65 (a)
ManyToMany
Species where no ortholog for RNU5A-8P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU5A-8P Gene

ENSEMBL:
Gene Tree for RNU5A-8P (if available)
TreeFam:
Gene Tree for RNU5A-8P (if available)

Paralogs for RNU5A-8P Gene

No data available for Paralogs for RNU5A-8P Gene

Variants for RNU5A-8P Gene

Relevant External Links for RNU5A-8P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-8P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-8P Gene

Disorders for RNU5A-8P Gene

No disorders were found for RNU5A-8P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-8P Gene

Publications for RNU5A-8P Gene

No publications were found for RNU5A-8P Gene.

Products for RNU5A-8P Gene

Sources for RNU5A-8P Gene

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