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Aliases for RNU5A-3P Gene

Subcategory (RNA class) for RNU5A-3P Gene

snRNA

Aliases for RNU5A-3P Gene

  • RNA, U5A Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU5A-3P Gene

ORGUL Members for RNU5A-3P Gene

Previous GeneCards Identifiers for RNU5A-3P Gene

  • GC00U933318
  • GC08P030503
  • GC08P030505

Summaries for RNU5A-3P Gene

GeneCards Summary for RNU5A-3P Gene

RNU5A-3P (RNA, U5A Small Nuclear 3, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-3P Gene

Genomics for RNU5A-3P Gene

Regulatory Elements for RNU5A-3P Gene

Enhancers for RNU5A-3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F030619 0.4 ENCODE 11.3 -23.8 -23811 0.2 KAT2B ENSG00000253112 RNU5A-3P SMIM18
GH08F030620 0.2 ENCODE 11.3 -23.0 -23020 1.0 SOX13 SAP130 GTF2E2 ZNF384 CEBPG ZNF644 RARA TEAD3 NR2F6 CREM ENSG00000253112 RNU5A-3P GTF2E2 SMIM18
GH08F030616 0.2 ENCODE 11.3 -26.7 -26694 1.2 ELF3 PKNOX1 ARID4B DMAP1 THRB RAD21 RARA YY1 CREM MIXL1 SMIM18 ENSG00000253112 RNU5A-3P
GH08F030579 0.5 ENCODE 10.2 -63.4 -63440 2.3 RING1 SMARCA4 RNF2 BMI1 CHD7 RBPMS RBPMS-AS1 RNU5A-3P GTF2E2 PPP2CB ENSG00000253112 PIR39743
GH08F030742 0.5 ENCODE 10.1 +99.0 98988 0.3 TBP SAP130 ZNF511 HLF CEBPB CEBPG RAD21 NR2F2 ZNF512 CEBPA PPP2CB RNU5A-3P GSR LOC105379355 PIR49055
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5A-3P Gene

Chromosome:
8
Start:
30,643,689 bp from pter
End:
30,643,802 bp from pter
Size:
114 bases
Orientation:
Plus strand

Genomic View for RNU5A-3P Gene

Genes around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-3P Gene

Proteins for RNU5A-3P Gene

Post-translational modifications for RNU5A-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-3P Gene

Domains & Families for RNU5A-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-3P Gene

Function for RNU5A-3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-3P Gene

Localization for RNU5A-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5A-3P Gene

Pathways & Interactions for RNU5A-3P Gene

SuperPathways for RNU5A-3P Gene

No Data Available

Interacting Proteins for RNU5A-3P Gene

Gene Ontology (GO) - Biological Process for RNU5A-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5A-3P Gene

Transcripts for RNU5A-3P Gene

mRNA/cDNA for RNU5A-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-3P Gene

No ASD Table

Relevant External Links for RNU5A-3P Gene

GeneLoc Exon Structure for
RNU5A-3P
ECgene alternative splicing isoforms for
RNU5A-3P

Expression for RNU5A-3P Gene

mRNA expression in normal human tissues for RNU5A-3P Gene

genes like me logo Genes that share expression patterns with RNU5A-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU5A-3P Gene

Orthologs for RNU5A-3P Gene

Evolution for RNU5A-3P Gene

ENSEMBL:
Gene Tree for RNU5A-3P (if available)
TreeFam:
Gene Tree for RNU5A-3P (if available)

No data available for Orthologs for RNU5A-3P Gene

Paralogs for RNU5A-3P Gene

No data available for Paralogs for RNU5A-3P Gene

Variants for RNU5A-3P Gene

Relevant External Links for RNU5A-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-3P Gene

Disorders for RNU5A-3P Gene

No disorders were found for RNU5A-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-3P Gene

Publications for RNU5A-3P Gene

No publications were found for RNU5A-3P Gene.

Products for RNU5A-3P Gene

Sources for RNU5A-3P Gene

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