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Aliases for RNU5A-3P Gene

Subcategory (RNA class) for RNU5A-3P Gene

snRNA

Aliases for RNU5A-3P Gene

  • RNA, U5A Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU5A-3P Gene

ORGUL Members for RNU5A-3P Gene

Previous GeneCards Identifiers for RNU5A-3P Gene

  • GC00U933318
  • GC08P030503
  • GC08P030505

Summaries for RNU5A-3P Gene

GeneCards Summary for RNU5A-3P Gene

RNU5A-3P (RNA, U5A Small Nuclear 3, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-3P Gene

Genomics for RNU5A-3P Gene

Regulatory Elements for RNU5A-3P Gene

Enhancers for RNU5A-3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G030743 1.4 ENCODE dbSUPER 10 +100.5 100453 2.5 PKNOX1 FOXA2 CREB3L1 ARNT SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF766 WRN GTF2E2 PPP2CB RNU5A-3P GSR UBXN8 GC08M030742 LOC105379355
GH08G030545 1.4 Ensembl ENCODE dbSUPER 9.8 -94.0 -93987 8.2 PKNOX1 ATF1 ZFP64 ARID4B DMAP1 ZNF48 YY1 SP5 MXD4 REST RBPMS-AS1 RBPMS ENSG00000253112 RNU5A-3P GTF2E2 SMIM18 PIR38894 PIR40668
GH08G030496 1.1 Ensembl ENCODE dbSUPER 9.6 -146.2 -146245 1.7 ARID3A MTA2 BHLHE40 NR2F1 JUNB RELB RELA RBPMS RBPMS-AS1 RNU5A-3P GTF2E2 PIR31328
GH08G030616 0.9 ENCODE 11.3 -26.7 -26694 1.2 ELF3 PKNOX1 FOXA2 ARID4B DMAP1 THRB RAD21 RARA YY1 CREM SMIM18 ENSG00000253112 RNU5A-3P
GH08G030620 0.8 ENCODE 11.3 -23.0 -23020 1.0 SOX13 SAP130 GTF2E2 MAX CEBPG ZNF384 ZNF644 RARA TEAD3 NCOR1 ENSG00000253112 RNU5A-3P GTF2E2 SMIM18
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU5A-3P Gene

Chromosome:
8
Start:
30,643,689 bp from pter
End:
30,643,802 bp from pter
Size:
114 bases
Orientation:
Plus strand

Genomic View for RNU5A-3P Gene

Genes around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-3P Gene

Proteins for RNU5A-3P Gene

Post-translational modifications for RNU5A-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-3P Gene

Domains & Families for RNU5A-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-3P Gene

Function for RNU5A-3P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-3P Gene

Localization for RNU5A-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5A-3P Gene

Pathways & Interactions for RNU5A-3P Gene

SuperPathways for RNU5A-3P Gene

No Data Available

Interacting Proteins for RNU5A-3P Gene

Gene Ontology (GO) - Biological Process for RNU5A-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5A-3P Gene

Drugs & Compounds for RNU5A-3P Gene

No Compound Related Data Available

Transcripts for RNU5A-3P Gene

mRNA/cDNA for RNU5A-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-3P Gene

No ASD Table

Relevant External Links for RNU5A-3P Gene

GeneLoc Exon Structure for
RNU5A-3P
ECgene alternative splicing isoforms for
RNU5A-3P

Expression for RNU5A-3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5A-3P Gene

genes like me logo Genes that share expression patterns with RNU5A-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5A-3P Gene

Orthologs for RNU5A-3P Gene

Evolution for RNU5A-3P Gene

ENSEMBL:
Gene Tree for RNU5A-3P (if available)
TreeFam:
Gene Tree for RNU5A-3P (if available)

No data available for Orthologs for RNU5A-3P Gene

Paralogs for RNU5A-3P Gene

No data available for Paralogs for RNU5A-3P Gene

Variants for RNU5A-3P Gene

Relevant External Links for RNU5A-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-3P Gene

Disorders for RNU5A-3P Gene

No disorders were found for RNU5A-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-3P Gene

Publications for RNU5A-3P Gene

No publications were found for RNU5A-3P Gene.

Products for RNU5A-3P Gene

Sources for RNU5A-3P Gene

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