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Aliases for RNU5A-2P Gene

Subcategory (RNA class) for RNU5A-2P Gene

snRNA

Aliases for RNU5A-2P Gene

  • RNA, U5A Small Nuclear 2, Pseudogene 2 3 5

External Ids for RNU5A-2P Gene

ORGUL Members for RNU5A-2P Gene

Previous GeneCards Identifiers for RNU5A-2P Gene

  • GC00U933092
  • GC04P082256

Summaries for RNU5A-2P Gene

GeneCards Summary for RNU5A-2P Gene

RNU5A-2P (RNA, U5A Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5A-2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-2P Gene

Genomics for RNU5A-2P Gene

GeneHancer (GH) Regulatory Elements for RNU5A-2P Gene

Promoters and enhancers for RNU5A-2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I081206 Enhancer 0.7 ENCODE dbSUPER 11.1 -126.5 -126526 3.5 ATF4 GATA3 CEBPB FOS CEBPG EP300 RNU5A-2P LOC101928942 PRKG2 GC04M081149
GH04I081203 Enhancer 0.4 ENCODE dbSUPER 11.1 -129.8 -129806 1.3 RNU5A-2P LOC101928942 PRKG2 GC04M081149
GH04I081420 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.2 +87.5 87490 2.3 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 POLR2B ZNF766 GATA2 FOS RASGEF1B GC04M081429 RNU5A-2P
GH04I081351 Enhancer 0.6 ENCODE 0.4 +17.5 17519 0.2 CTCF ZNF654 TRIM22 REST RAD21 KLF16 SMC3 ZNF143 PRKG2 RNU5A-2P GC04M081429
GH04I081405 Enhancer 0.9 Ensembl ENCODE 0.2 +71.8 71805 0.6 CTCF ARNT CEBPG RAD21 IRF9 SMC3 PRDM10 THAP11 MIXL1 ZNF654 GC04M081429 RNU5A-2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5A-2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5A-2P Gene

Genomic Locations for RNU5A-2P Gene
chr4:81,334,303-81,334,418
(GRCh38/hg38)
Size:
116 bases
Orientation:
Plus strand
chr4:82,255,457-82,255,572
(GRCh37/hg19)

Genomic View for RNU5A-2P Gene

Genes around RNU5A-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-2P Gene

Proteins for RNU5A-2P Gene

Post-translational modifications for RNU5A-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-2P Gene

Domains & Families for RNU5A-2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-2P Gene

Function for RNU5A-2P Gene

Phenotypes From GWAS Catalog for RNU5A-2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-2P Gene

Localization for RNU5A-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5A-2P Gene

Pathways & Interactions for RNU5A-2P Gene

SuperPathways for RNU5A-2P Gene

No Data Available

Interacting Proteins for RNU5A-2P Gene

Gene Ontology (GO) - Biological Process for RNU5A-2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5A-2P Gene

Drugs & Compounds for RNU5A-2P Gene

No Compound Related Data Available

Transcripts for RNU5A-2P Gene

mRNA/cDNA for RNU5A-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-2P Gene

No ASD Table

Relevant External Links for RNU5A-2P Gene

GeneLoc Exon Structure for
RNU5A-2P
ECgene alternative splicing isoforms for
RNU5A-2P

Expression for RNU5A-2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5A-2P Gene

genes like me logo Genes that share expression patterns with RNU5A-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5A-2P Gene

Orthologs for RNU5A-2P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU5A-2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 99 (a)
OneToOne
Species where no ortholog for RNU5A-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5A-2P Gene

ENSEMBL:
Gene Tree for RNU5A-2P (if available)
TreeFam:
Gene Tree for RNU5A-2P (if available)

Paralogs for RNU5A-2P Gene

No data available for Paralogs for RNU5A-2P Gene

Variants for RNU5A-2P Gene

Additional Variant Information for RNU5A-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-2P Gene

Disorders for RNU5A-2P Gene

No disorders were found for RNU5A-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-2P Gene

Publications for RNU5A-2P Gene

No publications were found for RNU5A-2P Gene.

Products for RNU5A-2P Gene

Sources for RNU5A-2P Gene

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