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Aliases for RNU5A-1 Gene

Subcategory (RNA class) for RNU5A-1 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU5A-1 Gene

  • RNA, U5A Small Nuclear 1 2 3
  • RNA, U5C Small Nuclear 2 3
  • RNU5A 3 6
  • RNU5 3 6
  • RNA, U5A Small Nuclear 2
  • RNU5C 3
  • U5B1 3
  • U5A 3

External Ids for RNU5A-1 Gene

ORGUL Members for RNU5A-1 Gene

Previous HGNC Symbols for RNU5A-1 Gene

  • RNU5C
  • RNU5A

Previous GeneCards Identifiers for RNU5A-1 Gene

  • GC15P065590
  • GC15P065675
  • GC15P065763

Summaries for RNU5A-1 Gene

GeneCards Summary for RNU5A-1 Gene

RNU5A-1 (RNA, U5A Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class. Diseases associated with RNU5A-1 include poikiloderma with neutropenia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-1 Gene

Genomics for RNU5A-1 Gene

Genomic Location for RNU5A-1 Gene

Start:
65,296,051 bp from pter
End:
65,296,167 bp from pter
Size:
117 bases
Orientation:
Plus strand

Genomic View for RNU5A-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU5A-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-1 Gene

No data available for Regulatory Elements for RNU5A-1 Gene

Proteins for RNU5A-1 Gene

Post-translational modifications for RNU5A-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-1 Gene

Domains for RNU5A-1 Gene

Gene Families for RNU5A-1 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU5A-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-1 Gene

Function for RNU5A-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU5A-1 Gene

Localization for RNU5A-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU5A-1 Gene

Pathways for RNU5A-1 Gene

SuperPathways for RNU5A-1 Gene

No Data Available

Interacting Proteins for RNU5A-1 Gene

Gene Ontology (GO) - Biological Process for RNU5A-1 Gene

None

No data available for Pathways by source for RNU5A-1 Gene

Transcripts for RNU5A-1 Gene

mRNA/cDNA for RNU5A-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNU5A-1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-1 Gene

No ASD Table

Relevant External Links for RNU5A-1 Gene

GeneLoc Exon Structure for
RNU5A-1
ECgene alternative splicing isoforms for
RNU5A-1

Expression for RNU5A-1 Gene

mRNA expression in normal human tissues for RNU5A-1 Gene

mRNA differential expression in normal tissues according to GTEx for RNU5A-1 Gene

This gene is overexpressed in Testis (5.0).
genes like me logo Genes that share expressions with RNU5A-1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for RNU5A-1 Gene

Orthologs for RNU5A-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5A-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U5 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25313 36
  • 97 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U5 36
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 36
  • 91 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 36
  • 85 (a)
ManyToMany
Species with no ortholog for RNU5A-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5A-1 Gene

ENSEMBL:
Gene Tree for RNU5A-1 (if available)
TreeFam:
Gene Tree for RNU5A-1 (if available)

Paralogs for RNU5A-1 Gene

No data available for Paralogs for RNU5A-1 Gene

Variants for RNU5A-1 Gene

Sequence variations from dbSNP and Humsavar for RNU5A-1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs680524 -- 65,294,422(+) ggaga(C/T)tgagg upstream-variant-2KB
rs2044156 -- 65,295,285(-) TATTA(A/G)AAAAC upstream-variant-2KB
rs2257788 -- 65,294,931(-) ataGT(A/G)TATTT upstream-variant-2KB
rs2454128 -- 65,294,941(+) tatat(A/T)atata upstream-variant-2KB
rs2460416 -- 65,294,941(+) atata(A/T)tatat upstream-variant-2KB

Relevant External Links for RNU5A-1 Gene

HapMap Linkage Disequilibrium report
RNU5A-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNU5A-1 Gene

Disorders for RNU5A-1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for RNU5A-1 Gene including...

Search for RNU5A-1 Gene in MalaCards »
genes like me logo Genes that share disorders with RNU5A-1: view

No data available for UniProtKB/Swiss-Prot for RNU5A-1 Gene

Publications for RNU5A-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer E.J. … Steitz J.A. (Mol. Cell. Biol. 1992) 2 3
  2. The nuclear 5S RNAs from chicken, rat and man. U5 RNAs are encoded by multiple genes. (PMID: 6164980) Krol A. … Branlant C. (Nucleic Acids Res. 1981) 3
  3. High evolutionary conservation of the secondary structure and of certain nucleotide sequences of U5 RNA. (PMID: 6200827) Branlant C. … Pousada C. (Nucleic Acids Res. 1983) 3
  4. The multifunctional human p100 protein 'hooks' methylated ligands. (PMID: 17632523) Shaw N. … Rao Z. (Nat. Struct. Mol. Biol. 2007) 3
  5. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3

Products for RNU5A-1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU5A-1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU5A-1
    • Block miRNA regulation of RNU5A-1 using miScript Target Protectors

    Sources for RNU5A-1 Gene

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