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Aliases for RNU4ATAC4P Gene

Subcategory (RNA class) for RNU4ATAC4P Gene

snRNA

Aliases for RNU4ATAC4P Gene

  • RNA, U4atac Small Nuclear 4, Pseudogene 2 3 5

External Ids for RNU4ATAC4P Gene

ORGUL Members for RNU4ATAC4P Gene

Previous GeneCards Identifiers for RNU4ATAC4P Gene

  • GC01M067736

Summaries for RNU4ATAC4P Gene

GeneCards Summary for RNU4ATAC4P Gene

RNU4ATAC4P (RNA, U4atac Small Nuclear 4, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4ATAC4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4ATAC4P Gene

Genomics for RNU4ATAC4P Gene

Regulatory Elements for RNU4ATAC4P Gene

Enhancers for RNU4ATAC4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H067500 1.2 Ensembl ENCODE 10.7 -233.0 -232973 0 FOXA2 ATF1 ARNT ARID4B ZNF2 YY1 ZNF143 RUNX3 DEK MXD4 RNU6-387P IL12RB2 RNU4ATAC4P GC01P067513 PIR38616
GH01H067458 1.1 Ensembl ENCODE dbSUPER 10.3 -192.6 -192629 3 ZNF121 POLR2A ZNF366 GLIS1 ZSCAN5C CTBP2 ZIC2 SP7 RNU6-387P RNU4ATAC4P PIR38616 SERBP1
GH01H067399 0.9 ENCODE 10.4 -132.6 -132609 1 PKNOX1 KLF17 ZNF2 EGR1 ZNF366 FOS SMARCA5 CAVIN1 TSHZ1 ZEB2 SERBP1 RNU4ATAC4P LOC105378779 GC01P067418
GH01H067332 0.8 ENCODE 10.9 -65.5 -65455 1 PKNOX1 TBL1XR1 BMI1 BATF ATF7 ETV6 RUNX3 IKZF2 CREM CBFB IL12RB2 RNU4ATAC4P LOC105378779
GH01H067338 0.8 ENCODE 10.3 -71.0 -70967 0 ZNF384 EBF1 BATF EED ATF7 ETV6 RUNX3 IKZF2 CHD2 ZNF687 IL12RB2 SERBP1 RNU6-387P RNU4ATAC4P LOC105378779
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU4ATAC4P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4ATAC4P Gene

Chromosome:
1
Start:
67,267,601 bp from pter
End:
67,267,726 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU4ATAC4P Gene

Genes around RNU4ATAC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC4P Gene

Proteins for RNU4ATAC4P Gene

Post-translational modifications for RNU4ATAC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC4P Gene

Domains & Families for RNU4ATAC4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4ATAC4P Gene

Function for RNU4ATAC4P Gene

Phenotypes From GWAS Catalog for RNU4ATAC4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC4P Gene

Localization for RNU4ATAC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC4P Gene

Pathways & Interactions for RNU4ATAC4P Gene

SuperPathways for RNU4ATAC4P Gene

No Data Available

Interacting Proteins for RNU4ATAC4P Gene

Gene Ontology (GO) - Biological Process for RNU4ATAC4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4ATAC4P Gene

Drugs & Compounds for RNU4ATAC4P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC4P Gene

mRNA/cDNA for RNU4ATAC4P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC4P Gene

No ASD Table

Relevant External Links for RNU4ATAC4P Gene

GeneLoc Exon Structure for
RNU4ATAC4P
ECgene alternative splicing isoforms for
RNU4ATAC4P

Expression for RNU4ATAC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4ATAC4P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU4ATAC4P Gene:

RNU4ATAC4P
genes like me logo Genes that share expression patterns with RNU4ATAC4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC4P Gene

Orthologs for RNU4ATAC4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4atac 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4atac 34
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 34
  • 72 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4atac 34
  • 67 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U4atac 34
  • 58 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U4atac 34 34 34
  • 72 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U4atac 34
  • 63 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U4atac 34
  • 53 (a)
OneToMany
Species where no ortholog for RNU4ATAC4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4ATAC4P Gene

ENSEMBL:
Gene Tree for RNU4ATAC4P (if available)
TreeFam:
Gene Tree for RNU4ATAC4P (if available)

Paralogs for RNU4ATAC4P Gene

No data available for Paralogs for RNU4ATAC4P Gene

Variants for RNU4ATAC4P Gene

Relevant External Links for RNU4ATAC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC4P Gene

Disorders for RNU4ATAC4P Gene

No disorders were found for RNU4ATAC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC4P Gene

Publications for RNU4ATAC4P Gene

No publications were found for RNU4ATAC4P Gene.

Products for RNU4ATAC4P Gene

Sources for RNU4ATAC4P Gene

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