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Aliases for RNU4ATAC17P Gene

Subcategory (RNA class) for RNU4ATAC17P Gene

snRNA

Aliases for RNU4ATAC17P Gene

  • RNA, U4atac Small Nuclear 17, Pseudogene 2 3 5

External Ids for RNU4ATAC17P Gene

ORGUL Members for RNU4ATAC17P Gene

Summaries for RNU4ATAC17P Gene

GeneCards Summary for RNU4ATAC17P Gene

RNU4ATAC17P (RNA, U4atac Small Nuclear 17, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4ATAC17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4ATAC17P Gene

Genomics for RNU4ATAC17P Gene

Regulatory Elements for RNU4ATAC17P Gene

Enhancers for RNU4ATAC17P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H008417 0.7 Ensembl 11 -52.9 -52853 0 CTCF ZNF384 ZNF2 RAD21 RFX5 ZNF316 SMC3 ZNF143 NFE2 MAFK RNU4ATAC17P ENSG00000231401 GC03P008442
GH03H008329 0.4 FANTOM5 12 +35.5 35472 0 RNU4ATAC17P ENSG00000231401 PIR41205 ENSG00000228351
GH03H008319 0.4 ENCODE 11.3 +44.3 44338 1 FOS RNU4ATAC17P ENSG00000231401 PIR41205 ENSG00000228351
GH03H008403 0.3 FANTOM5 11.7 -38.9 -38853 0 RNU4ATAC17P ENSG00000231401 GC03P008442
GH03H008321 0.2 ENCODE 11.3 +43.4 43361 0 RNU4ATAC17P ENSG00000231401 PIR41205 ENSG00000228351
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU4ATAC17P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4ATAC17P Gene

Chromosome:
3
Start:
8,364,529 bp from pter
End:
8,364,648 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for RNU4ATAC17P Gene

Genes around RNU4ATAC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC17P Gene

Proteins for RNU4ATAC17P Gene

Post-translational modifications for RNU4ATAC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC17P Gene

Domains & Families for RNU4ATAC17P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4ATAC17P Gene

Function for RNU4ATAC17P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC17P Gene

Localization for RNU4ATAC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC17P Gene

Pathways & Interactions for RNU4ATAC17P Gene

SuperPathways for RNU4ATAC17P Gene

No Data Available

Interacting Proteins for RNU4ATAC17P Gene

Gene Ontology (GO) - Biological Process for RNU4ATAC17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4ATAC17P Gene

Drugs & Compounds for RNU4ATAC17P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC17P Gene

mRNA/cDNA for RNU4ATAC17P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC17P Gene

No ASD Table

Relevant External Links for RNU4ATAC17P Gene

GeneLoc Exon Structure for
RNU4ATAC17P
ECgene alternative splicing isoforms for
RNU4ATAC17P

Expression for RNU4ATAC17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4ATAC17P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU4ATAC17P Gene:

RNU4ATAC17P
genes like me logo Genes that share expression patterns with RNU4ATAC17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC17P Gene

Orthologs for RNU4ATAC17P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC17P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4atac 34
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4atac 34
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 34
  • 62 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4atac 34
  • 55 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U4atac 34
  • 55 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U4atac 34 34 34
  • 60 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U4atac 34
  • 53 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U4atac 34
  • 47 (a)
OneToMany
Species where no ortholog for RNU4ATAC17P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4ATAC17P Gene

ENSEMBL:
Gene Tree for RNU4ATAC17P (if available)
TreeFam:
Gene Tree for RNU4ATAC17P (if available)

Paralogs for RNU4ATAC17P Gene

No data available for Paralogs for RNU4ATAC17P Gene

Variants for RNU4ATAC17P Gene

Relevant External Links for RNU4ATAC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC17P Gene

Disorders for RNU4ATAC17P Gene

No disorders were found for RNU4ATAC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC17P Gene

Publications for RNU4ATAC17P Gene

No publications were found for RNU4ATAC17P Gene.

Products for RNU4ATAC17P Gene

Sources for RNU4ATAC17P Gene

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