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Aliases for RNU4ATAC Gene

Subcategory (RNA class) for RNU4ATAC Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU4ATAC Gene

  • RNA, U4atac Small Nuclear (U12-Dependent Splicing) 2 3
  • U4ATAC 3 6
  • MOPD1 3 6
  • TALS 3 6
  • RNU4ATAC1 3

External Ids for RNU4ATAC Gene

ORGUL Members for RNU4ATAC Gene

Previous GeneCards Identifiers for RNU4ATAC Gene

  • GC02U901429
  • GC02P122289
  • GC02P114611
  • GC02P122290
  • GC02P122294
  • GC02P122297

Summaries for RNU4ATAC Gene

Entrez Gene Summary for RNU4ATAC Gene

  • The small nuclear RNA (snRNA) encoded by this gene is part of the U12-dependent minor spliceosome complex. In addition to the encoded RNA, this ribonucleoprotein complex consists of U11, U12, U5, and U6atac snRNAs. The U12-dependent spliceosome acts on approximately 700 specific introns in the human genome. Defects in this gene are a cause of microcephalic osteodysplastic primordial dwarfism type 1 (MOPD). [provided by RefSeq, Jul 2011]

GeneCards Summary for RNU4ATAC Gene

RNU4ATAC (RNA, U4atac Small Nuclear (U12-Dependent Splicing)) is an RNA Gene, and is affiliated with the snRNA class. Diseases associated with RNU4ATAC include microcephalic osteodysplastic primordial dwarfism, type i and dwarfism.

fRNAdb sequence ontologies for RNU4ATAC Gene

  • U4atac minor spliceosomal RNA: U4atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U4atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U6atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U4atac also contains an 3' Sm protein binding site which has been shown to be essential for splicing activity [2]. U4atac is the functional analog of U4 (Rfam:RF00015) in the major U2-type spliceosomal complex [2]. The drosophila U4atac snRNA has an additional predicted 3' stem loop terminal to the Sm binding site [3] which is not included in this model.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU4ATAC Gene

Genomics for RNU4ATAC Gene

Regulatory Elements for RNU4ATAC Gene

Genomic Location for RNU4ATAC Gene

Start:
121,530,880 bp from pter
End:
121,531,009 bp from pter
Size:
130 bases
Orientation:
Plus strand

Genomic View for RNU4ATAC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU4ATAC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC Gene

Proteins for RNU4ATAC Gene

Post-translational modifications for RNU4ATAC Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC Gene

Domains for RNU4ATAC Gene

Gene Families for RNU4ATAC Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU4ATAC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4ATAC Gene

Function for RNU4ATAC Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU4ATAC Gene

Localization for RNU4ATAC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU4ATAC Gene

Pathways for RNU4ATAC Gene

SuperPathways for RNU4ATAC Gene

No Data Available

Interacting Proteins for RNU4ATAC Gene

Gene Ontology (GO) - Biological Process for RNU4ATAC Gene

None

No data available for Pathways by source for RNU4ATAC Gene

Transcripts for RNU4ATAC Gene

mRNA/cDNA for RNU4ATAC Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNU4ATAC Gene

RNA, U4atac small nuclear (U12-dependent splicing):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNU4ATAC

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC Gene

No ASD Table

Relevant External Links for RNU4ATAC Gene

GeneLoc Exon Structure for
RNU4ATAC
ECgene alternative splicing isoforms for
RNU4ATAC

Expression for RNU4ATAC Gene

mRNA expression in normal human tissues for RNU4ATAC Gene

SOURCE GeneReport for Unigene cluster for RNU4ATAC Gene Hs.689638

genes like me logo Genes that share expressions with RNU4ATAC: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNU4ATAC Gene

Orthologs for RNU4ATAC Gene

Evolution for RNU4ATAC Gene

ENSEMBL:
Gene Tree for RNU4ATAC (if available)
TreeFam:
Gene Tree for RNU4ATAC (if available)

No data available for Orthologs for RNU4ATAC Gene

Paralogs for RNU4ATAC Gene

No data available for Paralogs for RNU4ATAC Gene

Variants for RNU4ATAC Gene

Relevant External Links for RNU4ATAC Gene

HapMap Linkage Disequilibrium report
RNU4ATAC
Human Gene Mutation Database (HGMD)
RNU4ATAC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNU4ATAC Gene

Disorders for RNU4ATAC Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for RNU4ATAC Gene including...

Search for RNU4ATAC Gene in MalaCards »

(1) OMIM Diseases for RNU4ATAC Gene (601428)

genes like me logo Genes that share disorders with RNU4ATAC: view

No data available for UniProtKB/Swiss-Prot for RNU4ATAC Gene

Publications for RNU4ATAC Gene

  1. Influence of phosphate, sulfonic, and sulfamic acids on sulfoconjugate release in the vascularly perfused mouse small intestine. (PMID: 2409455) Wollenberg P. … Rummel W. (Naunyn Schmiedebergs Arch. Pharmacol. 1985) 3
  2. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PMID: 8791582) Tarn W.Y. … Steitz J.A. (Science 1996) 3
  3. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PMID: 11971955) Schneider C. … Luehrmann R. (Mol. Cell. Biol. 2002) 3
  4. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PMID: 12374753) Nottrott S. … LA1hrmann R. (EMBO J. 2002) 3
  5. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla G.C. … Padgett R.A. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3

Products for RNU4ATAC Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNU4ATAC
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNU4ATAC
    • Block miRNA regulation of RNU4ATAC using miScript Target Protectors

    Sources for RNU4ATAC Gene

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