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Aliases for RNU4-8P Gene

Aliases for RNU4-8P Gene

  • RNA, U4 Small Nuclear 8, Pseudogene 2 3 5
  • RNA, U4 Small Nuclear Pseudogene 2 (U4/14) 2 3
  • RNU4P2 3
  • U4/14 3
  • U4 3

External Ids for RNU4-8P Gene

Previous HGNC Symbols for RNU4-8P Gene

  • RNU4P2

Previous GeneCards Identifiers for RNU4-8P Gene

  • GC02M098280
  • GC02M092046

Summaries for RNU4-8P Gene

GeneCards Summary for RNU4-8P Gene

RNU4-8P (RNA, U4 Small Nuclear 8, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-8P Gene

Genomics for RNU4-8P Gene

Regulatory Elements for RNU4-8P Gene

Enhancers for RNU4-8P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F097589 0.9 ENCODE 12.1 +74.5 74473 2.1 HDGF ATF1 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ANKRD36B COX5B RNU4-8P ACTR1B LINC01125 ZAP70 LOC105373499
GH02F097725 1.4 Ensembl ENCODE 10.8 -62.1 -62142 3.6 BCOR CTCF ZMYM3 CEBPB MNT GABPA JUND CTBP1 SMARCA4 POLR2A ACTR1B LINC01125 COX5B RNU4-8P ANKRD36B LOC100506123 ZAP70 HMGN1P36
GH02F097751 0.5 FANTOM5 10.7 -86.6 -86640 0.2 ZAP70 LINC01125 RNU4-8P ACTR1B VWA3B TMEM131 ANKRD36B HMGN1P36
GH02F097759 0.5 ENCODE 10.7 -95.8 -95780 3.1 STAT1 FOXK2 POLR2A KLF9 KLF13 ANKRD36B ZAP70 LINC01125 RNU4-8P ACTR1B VWA3B LOC100506123 HMGN1P36
GH02F097720 0.2 ENCODE 10.6 -56.1 -56095 0.8 COX5B RNU4-8P ACTR1B LINC01125 ZAP70 HMGN1P36
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU4-8P on UCSC Golden Path with GeneCards custom track

Promoters for RNU4-8P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001544508 1070 2601 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF207 ZNF143

Genomic Location for RNU4-8P Gene

Chromosome:
2
Start:
97,664,292 bp from pter
End:
97,664,970 bp from pter
Size:
679 bases
Orientation:
Minus strand

Genomic View for RNU4-8P Gene

Genes around RNU4-8P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-8P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-8P Gene

Proteins for RNU4-8P Gene

Post-translational modifications for RNU4-8P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-8P Gene

Domains & Families for RNU4-8P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-8P Gene

Function for RNU4-8P Gene

Animal Model Products

miRNA for RNU4-8P Gene

miRTarBase miRNAs that target RNU4-8P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNU4-8P Gene

Localization for RNU4-8P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU4-8P Gene

Pathways & Interactions for RNU4-8P Gene

SuperPathways for RNU4-8P Gene

No Data Available

Interacting Proteins for RNU4-8P Gene

Gene Ontology (GO) - Biological Process for RNU4-8P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-8P Gene

Transcripts for RNU4-8P Gene

mRNA/cDNA for RNU4-8P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-8P Gene

No ASD Table

Relevant External Links for RNU4-8P Gene

GeneLoc Exon Structure for
RNU4-8P
ECgene alternative splicing isoforms for
RNU4-8P

Expression for RNU4-8P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-8P Gene

genes like me logo Genes that share expression patterns with RNU4-8P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU4-8P Gene

Orthologs for RNU4-8P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU4-8P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 35 35
  • 98 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22005 35
  • 80 (a)
OneToMany
Species where no ortholog for RNU4-8P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-8P Gene

ENSEMBL:
Gene Tree for RNU4-8P (if available)
TreeFam:
Gene Tree for RNU4-8P (if available)

Paralogs for RNU4-8P Gene

No data available for Paralogs for RNU4-8P Gene

Variants for RNU4-8P Gene

Relevant External Links for RNU4-8P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-8P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-8P Gene

Disorders for RNU4-8P Gene

Relevant External Links for RNU4-8P

Genetic Association Database (GAD)
RNU4-8P

No disorders were found for RNU4-8P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU4-8P Gene

Publications for RNU4-8P Gene

  1. Nucleotide sequence and organization of full length human U4 RNA pseudogenes. (PMID: 2583518) Bark C. … Pettersson U. (Gene 1989) 2 3 64

Products for RNU4-8P Gene

Sources for RNU4-8P Gene

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