Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU4-8P Gene

Aliases for RNU4-8P Gene

  • RNA, U4 Small Nuclear 8, Pseudogene 2 3 5
  • RNA, U4 Small Nuclear Pseudogene 2 (U4/14) 2 3
  • RNU4P2 3
  • U4/14 3
  • U4 3

External Ids for RNU4-8P Gene

Previous HGNC Symbols for RNU4-8P Gene

  • RNU4P2

Previous GeneCards Identifiers for RNU4-8P Gene

  • GC02M098280
  • GC02M092046

Summaries for RNU4-8P Gene

GeneCards Summary for RNU4-8P Gene

RNU4-8P (RNA, U4 Small Nuclear 8, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-8P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-8P Gene

Genomics for RNU4-8P Gene

Regulatory Elements for RNU4-8P Gene

Enhancers for RNU4-8P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H097725 1.2 Ensembl ENCODE dbSUPER 10.8 -62.1 -62142 3 BCOR ETV1 ZMYM3 MNT GABPA ZNF217 CTBP1 JUND POLR2A ADNP ACTR1B C2orf92 COX5B RNU4-8P ANKRD36B LOC100506123 ZAP70 HMGN1P36
GH02H097589 1 ENCODE 12.1 +74.5 74473 2 HDGF PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF143 ANKRD36B COX5B ACTR1B RNU4-8P C2orf92 ZAP70 LOC105373499
GH02H097759 0.7 ENCODE dbSUPER 10.7 -95.8 -95780 3 STAT1 FOXK2 KLF9 ANKRD36B ZAP70 ACTR1B C2orf92 RNU4-8P VWA3B LOC100506123 HMGN1P36
GH02H097720 0.5 ENCODE dbSUPER 10.6 -56.1 -56095 0 COX5B ACTR1B C2orf92 RNU4-8P ZAP70 HMGN1P36
GH02H097751 0.4 FANTOM5 10.8 -86.6 -86640 0 ZSCAN21 ZAP70 ACTR1B C2orf92 RNU4-8P VWA3B TMEM131 ANKRD36B HMGN1P36
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU4-8P on UCSC Golden Path with GeneCards custom track

Promoters for RNU4-8P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000120385 1070 2201 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 SLC30A9 ZNF766

Genomic Location for RNU4-8P Gene

Chromosome:
2
Start:
97,664,292 bp from pter
End:
97,664,970 bp from pter
Size:
679 bases
Orientation:
Minus strand

Genomic View for RNU4-8P Gene

Genes around RNU4-8P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-8P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-8P Gene

Proteins for RNU4-8P Gene

Post-translational modifications for RNU4-8P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-8P Gene

Domains & Families for RNU4-8P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-8P Gene

Function for RNU4-8P Gene

Phenotypes From GWAS Catalog for RNU4-8P Gene

Animal Model Products

CRISPR Products

miRNA for RNU4-8P Gene

miRTarBase miRNAs that target RNU4-8P

Clone Products

  • Applied Biological Materials Clones for RNU4-8P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNU4-8P Gene

Localization for RNU4-8P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-8P Gene

Pathways & Interactions for RNU4-8P Gene

SuperPathways for RNU4-8P Gene

No Data Available

Interacting Proteins for RNU4-8P Gene

Gene Ontology (GO) - Biological Process for RNU4-8P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-8P Gene

Drugs & Compounds for RNU4-8P Gene

No Compound Related Data Available

Transcripts for RNU4-8P Gene

mRNA/cDNA for RNU4-8P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU4-8P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-8P Gene

No ASD Table

Relevant External Links for RNU4-8P Gene

GeneLoc Exon Structure for
RNU4-8P
ECgene alternative splicing isoforms for
RNU4-8P

Expression for RNU4-8P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-8P Gene

genes like me logo Genes that share expression patterns with RNU4-8P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-8P Gene

Orthologs for RNU4-8P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU4-8P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34 34
  • 98 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22005 34
  • 80 (a)
OneToMany
Species where no ortholog for RNU4-8P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-8P Gene

ENSEMBL:
Gene Tree for RNU4-8P (if available)
TreeFam:
Gene Tree for RNU4-8P (if available)

Paralogs for RNU4-8P Gene

No data available for Paralogs for RNU4-8P Gene

Variants for RNU4-8P Gene

Relevant External Links for RNU4-8P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-8P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-8P Gene

Disorders for RNU4-8P Gene

Relevant External Links for RNU4-8P

Genetic Association Database (GAD)
RNU4-8P

No disorders were found for RNU4-8P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU4-8P Gene

Publications for RNU4-8P Gene

  1. Nucleotide sequence and organization of full length human U4 RNA pseudogenes. (PMID: 2583518) Bark C … Pettersson U (Gene 1989) 2 3 60

Products for RNU4-8P Gene

Sources for RNU4-8P Gene

Content
Loading form....