RNU4-8P Gene
pseudogene GIFtS: 13
GCID: GC02M098280
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RNA, U4 small nuclear 8, pseudogene(Previous names: RNA, U4 small nuclear pseudogene 2 (U4/14) )
(Previous symbol: RNU4P2)
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Aliases
for RNU4-8P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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| Aliases |
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| RNA, U4 Small Nuclear 8, Pseudogene1 2 | | RNU4P21 2 | | U41 2 | | U4/141 2 | | RNA, U4 Small Nuclear Pseudogene 2 (U4/14)1 |
Export aliases for RNU4-8P gene to outside databasesPrevious GC identifers: GC02M097649 GC02M092046 |
Summaries
for RNU4-8P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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-- |
Genomic Views
for RNU4-8P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for RNU4-8P
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNU4-8P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU4-8P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q11.2 Ensembl cytogenetic band: 2q11.2 HGNC cytogenetic band: 2q11.2RNU4-8P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M098280: view genomic region
(about GC identifiers)
Start:
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98,280,755 bp from pter |
End:
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98,281,433 bp from pter |
Size:
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679 bases |
Orientation:
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minus strand |
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Proteins
for RNU4-8P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for RNU4-8P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for RNU4-8P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Animal Models:
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for RNU4-8P | |  | Search LifeMap BioReagents cell lines for RNU4-8P |
Pathways & Interactions
for RNU4-8P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU4-8P
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Drugs & Compounds
for RNU4-8P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for RNU4-8P
Search CenterWatch for drugs/clinical trials and news about RNU4-8P 
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Transcripts
for RNU4-8P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000364936(snRNA)
GeneLoc Exon Structure
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Expression
for RNU4-8P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNU4-8P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RNU4-8P
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU4-8P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU4-8P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU4-8P |
Orthologs
for RNU4-8P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RNU4-8P (if available)
TreeFam Gene Tree for RNU4-8P (if available) |
Paralogs
for RNU4-8P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNU4-8P gene
- RNU4-10P2 ENSG000001993252 ENSG000002525012 ENSG000002010762 ENSG000001996722 ENSG000002227602 ENSG000001997092 ENSG000002225602
- ENSG000001994832 ENSG000002220572 ENSG000001999202 ENSG000002002742 ENSG000002024712 ENSG000002014392 ENSG000002530482 ENSG000002522372
- ENSG000002011842 RNU4-6P2 ENSG000002010702 RNU4-5P2 RNU4-7P2 ENSG000002014352 ENSG000002225012 ENSG000002016072
- ENSG000002227952 RNU4-9P2 ENSG000002013792 ENSG000002011642 ENSG000002226092 ENSG000001994582 RNU4-22 ENSG000002023392
- ENSG000002222022 ENSG000002226862 ENSG000002229902 ENSG000002016092 ENSG000002014912 ENSG000002221462 ENSG000002013172 ENSG000002232122
- ENSG000002012962 RNU4-12 ENSG000002020692 ENSG000002021032 ENSG000002024292 ENSG000002004312 ENSG000002227902 ENSG000002517522
- ENSG000002013422 ENSG000002223632 ENSG000001993132 ENSG000002016482 ENSG000002000342 ENSG000002228082 ENSG000002000622 ENSG000002024682
- ENSG000002016082 RNU4-4P2 ENSG000001996342 ENSG000002520672 ENSG000002021812 ENSG000002228212 ENSG000002012212 ENSG000002226632
- ENSG000002000702 ENSG000002517892 ENSG000002221772 ENSG000002016142 ENSG000002220672 ENSG000002073092 ENSG000002227272 ENSG000002006532
- ENSG000002021572 ENSG000002012312 ENSG000002232452 ENSG000002231522 ENSG000002525602 ENSG000002011862 ENSG000002069382 ENSG000002224052
- ENSG000002227502 ENSG000002069362 ENSG000002231752 ENSG000002015452 ENSG000002228722 ENSG000002015702 ENSG000002009742 ENSG000002008892
- ENSG000002518892 ENSG000001996432
RNU4-8P for paralogs About GeneDecksing
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Genomic Variants
for RNU4-8P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 2 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for RNU4-8P (98280755 - 98281433 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RNU4-8P: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RNU4-8P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for RNU4-8P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed article for RNU4-8P gene integrated from 9 sources:
(articles sorted by number of sources associating them with RNU4-8P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Nucleotide sequence and organization of full length human U4 RNA pseudogenes. (PubMed id 2583518)1, 3 Bark C. and Pettersson U. (1989)
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External Searches for RNU4-8P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNU4-8P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing RNU4-8P gene
(According to HUGE)
About This Section
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Specialized Databases showing RNU4-8P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for RNU4-8P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for RNU4-8P gene:
Search GeneIP for patents involving RNU4-8P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RNU4-8P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU4-8P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU4-8P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU4-8P | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU4-8P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU4-8P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU4-8P |
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| | | | Search Tocris compounds for RNU4-8P |
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 | | | | |  |  |  |  | | | | Search ThermoFisher Antibodies for RNU4-8P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU4-8P |
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GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013
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