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Aliases for RNU4-62P Gene

Subcategory (RNA class) for RNU4-62P Gene

snRNA

Aliases for RNU4-62P Gene

  • RNA, U4 Small Nuclear 62, Pseudogene 2 3 5

External Ids for RNU4-62P Gene

ORGUL Members for RNU4-62P Gene

Previous GeneCards Identifiers for RNU4-62P Gene

  • GC03M121375

Summaries for RNU4-62P Gene

GeneCards Summary for RNU4-62P Gene

RNU4-62P (RNA, U4 Small Nuclear 62, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-62P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-62P Gene

Genomics for RNU4-62P Gene

GeneHancer (GH) Regulatory Elements for RNU4-62P Gene

Promoters and enhancers for RNU4-62P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I121654 Enhancer 0.9 ENCODE dbSUPER 550.8 +1.0 976 1.3 BATF IRF4 RELA ETV6 BCLAF1 IKZF2 RUNX3 SMARCA5 HLF JUNB RNU4-62P RN7SL172P IQCB1 SLC15A2 HCLS1 GC03M121324
GH03I121655 Enhancer 0.7 FANTOM5 dbSUPER 550.8 0.0 -12 0.2 ZNF555 ZFP64 ZNF140 ZNF623 RNU4-62P RN7SL172P GOLGB1 IQCB1 LOC102723582 HCLS1 SLC15A2 EAF2 GC03M121324
GH03I121745 Promoter 0.6 EPDnew 11.9 -90.2 -90186 0.1 ZNF623 GOLGB1 RN7SL172P RNU4-62P GC03P121749 PIR54680 GC03M121324
GH03I121757 Enhancer 0.3 ENCODE 11.4 -101.9 -101892 1.7 NR2F2 HCLS1 IQCB1 RN7SL172P RNU4-62P SLC15A2 GOLGB1 GC03M121324
GH03I121658 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -4.5 -4466 3.9 HDGF PKNOX1 ATF1 SMAD1 RB1 ZBTB40 KLF5 E2F8 ZNF207 ZNF143 HCLS1 IQCB1 SLC15A2 GOLGB1 CD86 RNU4-62P GC03M121324
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-62P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-62P Gene

Genomic Locations for RNU4-62P Gene
chr3:121,655,475-121,655,604
(GRCh38/hg38)
Size:
130 bases
Orientation:
Minus strand
chr3:121,374,322-121,374,451
(GRCh37/hg19)

Genomic View for RNU4-62P Gene

Genes around RNU4-62P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-62P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-62P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-62P Gene

Proteins for RNU4-62P Gene

Post-translational modifications for RNU4-62P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-62P Gene

Domains & Families for RNU4-62P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-62P Gene

Function for RNU4-62P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-62P Gene

Localization for RNU4-62P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-62P Gene

Pathways & Interactions for RNU4-62P Gene

SuperPathways for RNU4-62P Gene

No Data Available

Interacting Proteins for RNU4-62P Gene

Gene Ontology (GO) - Biological Process for RNU4-62P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-62P Gene

Drugs & Compounds for RNU4-62P Gene

No Compound Related Data Available

Transcripts for RNU4-62P Gene

mRNA/cDNA for RNU4-62P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-62P Gene

No ASD Table

Relevant External Links for RNU4-62P Gene

GeneLoc Exon Structure for
RNU4-62P
ECgene alternative splicing isoforms for
RNU4-62P

Expression for RNU4-62P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-62P Gene

mRNA differential expression in normal tissues according to GTEx for RNU4-62P Gene

This gene is overexpressed in Whole Blood (x28.8) and Spleen (x8.0).
genes like me logo Genes that share expression patterns with RNU4-62P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-62P Gene

Orthologs for RNU4-62P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-62P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 34
  • 59 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 34
  • 59 (a)
ManyToMany
Species where no ortholog for RNU4-62P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-62P Gene

ENSEMBL:
Gene Tree for RNU4-62P (if available)
TreeFam:
Gene Tree for RNU4-62P (if available)

Paralogs for RNU4-62P Gene

No data available for Paralogs for RNU4-62P Gene

Variants for RNU4-62P Gene

Additional Variant Information for RNU4-62P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-62P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-62P Gene

Disorders for RNU4-62P Gene

No disorders were found for RNU4-62P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-62P Gene

Publications for RNU4-62P Gene

No publications were found for RNU4-62P Gene.

Products for RNU4-62P Gene

Sources for RNU4-62P Gene

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