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Aliases for RNU4-38P Gene

Subcategory (RNA class) for RNU4-38P Gene

snRNA

Aliases for RNU4-38P Gene

  • RNA, U4 Small Nuclear 38, Pseudogene 2 3 5

External Ids for RNU4-38P Gene

ORGUL Members for RNU4-38P Gene

Previous GeneCards Identifiers for RNU4-38P Gene

  • GC03P169777

Summaries for RNU4-38P Gene

GeneCards Summary for RNU4-38P Gene

RNU4-38P (RNA, U4 Small Nuclear 38, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-38P Gene

Genomics for RNU4-38P Gene

Regulatory Elements for RNU4-38P Gene

Enhancers for RNU4-38P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F170033 1.2 FANTOM5 Ensembl ENCODE 13.6 -23.7 -23701 1.2 CTCF USF1 NFYC USF2 DPF2 ARID1B RAD51 IKZF1 NFYB PRDM10 GPR160 RNU4-38P SEC62 LOC100128164 LRRC31 LRRC34 LRRIQ4 SAMD7 RNU7-32P SKIL
GH03F170024 0.6 Ensembl 12.2 -32.0 -32001 1.0 MAX ATF2 MYC GPR160 RNU4-38P SEC62 LOC100128164 LRRC31 LRRC34 LRRIQ4 SEC62-AS1
GH03F170021 0.4 ENCODE 12.2 -34.4 -34382 2.7 SOX13 GATAD2A ATF1 HMG20B NRF1 CEBPB CEBPG HMG20A ZNF644 POLR2A GPR160 RNU4-38P SEC62 LOC100128164 LRRC31 LRRC34 LRRIQ4 SEC62-AS1
GH03F170012 0.2 ENCODE 12 -44.3 -44326 1.0 SOX13 HLF GPR160 RNU4-38P LOC100128164 SEC62 SEC62-AS1
GH03F170006 1.2 Ensembl ENCODE 11.5 -50.3 -50300 1.6 ELF3 MCM3 ETV1 ZNF175 CEBPB CEBPG ZNF644 GABPA GABPB1 CEBPA GPR160 LOC100128164 RNU4-38P SAMD7 LRRC34 LRRIQ4 SEC62 SEC62-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU4-38P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4-38P Gene

Chromosome:
3
Start:
170,057,301 bp from pter
End:
170,057,429 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for RNU4-38P Gene

Genes around RNU4-38P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-38P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-38P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-38P Gene

Proteins for RNU4-38P Gene

Post-translational modifications for RNU4-38P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-38P Gene

Domains & Families for RNU4-38P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-38P Gene

Function for RNU4-38P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-38P Gene

Localization for RNU4-38P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU4-38P Gene

Pathways & Interactions for RNU4-38P Gene

SuperPathways for RNU4-38P Gene

No Data Available

Interacting Proteins for RNU4-38P Gene

Gene Ontology (GO) - Biological Process for RNU4-38P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-38P Gene

Transcripts for RNU4-38P Gene

mRNA/cDNA for RNU4-38P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-38P Gene

No ASD Table

Relevant External Links for RNU4-38P Gene

GeneLoc Exon Structure for
RNU4-38P
ECgene alternative splicing isoforms for
RNU4-38P

Expression for RNU4-38P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-38P Gene

genes like me logo Genes that share expression patterns with RNU4-38P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU4-38P Gene

Orthologs for RNU4-38P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-38P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25284 35
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 35
  • 60 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 35
  • 66 (a)
ManyToMany
Species where no ortholog for RNU4-38P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-38P Gene

ENSEMBL:
Gene Tree for RNU4-38P (if available)
TreeFam:
Gene Tree for RNU4-38P (if available)

Paralogs for RNU4-38P Gene

No data available for Paralogs for RNU4-38P Gene

Variants for RNU4-38P Gene

Relevant External Links for RNU4-38P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-38P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-38P Gene

Disorders for RNU4-38P Gene

No disorders were found for RNU4-38P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-38P Gene

Publications for RNU4-38P Gene

No publications were found for RNU4-38P Gene.

Products for RNU4-38P Gene

Sources for RNU4-38P Gene

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