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Aliases for RNU4-30P Gene

Aliases for RNU4-30P Gene

  • RNA, U4 Small Nuclear 30, Pseudogene 2 3 5

External Ids for RNU4-30P Gene

Previous GeneCards Identifiers for RNU4-30P Gene

  • GC16M068364
  • GC16M068365

Summaries for RNU4-30P Gene

GeneCards Summary for RNU4-30P Gene

RNU4-30P (RNA, U4 Small Nuclear 30, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-30P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-30P Gene

Genomics for RNU4-30P Gene

Regulatory Elements for RNU4-30P Gene

Enhancers for RNU4-30P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H068279 2 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +43.1 43069 13 HDGF PKNOX1 FOXA2 MLX SIN3A ARID4B DMAP1 SLC30A9 ZNF766 FOS PRMT7 SLC7A6 NFATC3 SLC7A6OS RNU4-30P DUS2 RANBP10 DPEP2 PSMB10 LRRC36
GH16H068351 0.9 ENCODE dbSUPER 11.4 -22.4 -22436 1 HDGF MAZ PKNOX1 RFX1 SIN3A KLF17 MNT ELF1 DPF2 FOXA1 PRMT7 SLC7A6 RNU4-30P DPEP2 ENSG00000279693
GH16H068298 0.9 ENCODE dbSUPER 11.2 +29.8 29766 3 NFIB NFIA HLF ZNF7 NFIC POLR2A ZBTB48 SCRT2 PRDM1 PRMT7 SLC7A6 RNU4-30P ENSG00000212445 PIR52899 PIR42569
GH16H068220 0.9 ENCODE dbSUPER 10.8 +108.8 108761 1 SOX13 SAP130 NRF1 CEBPB CEBPG ZSCAN9 ATF2 CEBPA ATF7 SMAD4 PRMT7 ENSG00000212445 SLC7A6 RNU4-30P NFATC3 NRN1L SLC7A6OS DUS2 DDX28 DPEP3
GH16H068377 0.8 ENCODE dbSUPER 10.8 -48.2 -48234 1 ZNF217 SMARCE1 CTBP1 RFX1 DPF2 BMI1 PRMT7 SLC7A6 SLC7A6OS RNU4-30P ENSG00000279693 GC16M068393
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU4-30P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4-30P Gene

Chromosome:
16
Start:
68,329,387 bp from pter
End:
68,329,529 bp from pter
Size:
143 bases
Orientation:
Minus strand

Genomic View for RNU4-30P Gene

Genes around RNU4-30P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-30P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-30P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-30P Gene

Proteins for RNU4-30P Gene

Post-translational modifications for RNU4-30P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-30P Gene

Domains & Families for RNU4-30P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-30P Gene

Function for RNU4-30P Gene

Phenotypes From GWAS Catalog for RNU4-30P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-30P Gene

Localization for RNU4-30P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-30P Gene

Pathways & Interactions for RNU4-30P Gene

SuperPathways for RNU4-30P Gene

No Data Available

Interacting Proteins for RNU4-30P Gene

Gene Ontology (GO) - Biological Process for RNU4-30P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-30P Gene

Drugs & Compounds for RNU4-30P Gene

No Compound Related Data Available

Transcripts for RNU4-30P Gene

mRNA/cDNA for RNU4-30P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-30P Gene

No ASD Table

Relevant External Links for RNU4-30P Gene

GeneLoc Exon Structure for
RNU4-30P
ECgene alternative splicing isoforms for
RNU4-30P

Expression for RNU4-30P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-30P Gene

genes like me logo Genes that share expression patterns with RNU4-30P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-30P Gene

Orthologs for RNU4-30P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-30P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia U4 34
  • 76 (a)
OneToMany
Gm26026 34
  • 66 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4 34
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 52 (a)
OneToOne
Species where no ortholog for RNU4-30P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-30P Gene

ENSEMBL:
Gene Tree for RNU4-30P (if available)
TreeFam:
Gene Tree for RNU4-30P (if available)

Paralogs for RNU4-30P Gene

No data available for Paralogs for RNU4-30P Gene

Variants for RNU4-30P Gene

Relevant External Links for RNU4-30P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-30P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-30P Gene

Disorders for RNU4-30P Gene

No disorders were found for RNU4-30P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-30P Gene

Publications for RNU4-30P Gene

No publications were found for RNU4-30P Gene.

Products for RNU4-30P Gene

Sources for RNU4-30P Gene

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