Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU4-30P Gene

Aliases for RNU4-30P Gene

  • RNA, U4 Small Nuclear 30, Pseudogene 2 3 5

External Ids for RNU4-30P Gene

Previous GeneCards Identifiers for RNU4-30P Gene

  • GC16M068364
  • GC16M068365

Summaries for RNU4-30P Gene

GeneCards Summary for RNU4-30P Gene

RNU4-30P (RNA, U4 Small Nuclear 30, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-30P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-30P Gene

Genomics for RNU4-30P Gene

GeneHancer (GH) Regulatory Elements for RNU4-30P Gene

Promoters and enhancers for RNU4-30P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I068326 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 +0.8 774 3.7 ARID4B NEUROD1 SIN3A FEZF1 IRF4 BRCA1 ZNF48 GLIS2 ARID2 ZNF143 RNU4-30P PRMT7 SLC7A6 DUS2 DPEP2 ENSG00000259797
GH16I068279 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +43.1 43068 13.5 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B DMAP1 IRF4 SLC30A9 ZNF766 PRMT7 SLC7A6 NFATC3 SLC7A6OS RNU4-30P DUS2 RANBP10 DPEP2 PSMB10 LRRC36
GH16I068351 Enhancer 0.9 ENCODE dbSUPER 11.4 -22.4 -22436 1.3 HDGF PKNOX1 KLF17 SIN3A CTBP1 GATA3 SCRT2 RCOR1 ZNF444 RFX1 PRMT7 SLC7A6 RNU4-30P DPEP2 ENSG00000279693
GH16I068298 Enhancer 0.8 ENCODE dbSUPER 11.2 +29.8 29765 3.2 NFIA NFIB HLF ETS1 ZNF7 NFIC POLR2A ZBTB48 SCRT2 PRDM1 GC16M068302 GC16P068299 PIR31135 PIR56992 PIR42569 PIR52899 PIR60437 PIR61178 PIR39022 GC16M068298
GH16I068220 Enhancer 0.8 ENCODE dbSUPER 10.8 +108.8 108761 1.4 SOX13 SAP130 NRF1 CEBPB CEBPG ZSCAN9 ATF2 ZNF335 CEBPA SMAD4 ENSG00000260891 PRMT7 ENSG00000212445 SLC7A6 RNU4-30P NFATC3 NRN1L SLC7A6OS DUS2 DDX28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-30P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-30P Gene

Genomic Locations for RNU4-30P Gene
chr16:68,329,387-68,329,529
(GRCh38/hg38)
Size:
143 bases
Orientation:
Minus strand
chr16:68,363,290-68,363,432
(GRCh37/hg19)

Genomic View for RNU4-30P Gene

Genes around RNU4-30P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-30P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-30P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-30P Gene

Proteins for RNU4-30P Gene

Post-translational modifications for RNU4-30P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-30P Gene

Domains & Families for RNU4-30P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-30P Gene

Function for RNU4-30P Gene

Phenotypes From GWAS Catalog for RNU4-30P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-30P Gene

Localization for RNU4-30P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-30P Gene

Pathways & Interactions for RNU4-30P Gene

SuperPathways for RNU4-30P Gene

No Data Available

Interacting Proteins for RNU4-30P Gene

Gene Ontology (GO) - Biological Process for RNU4-30P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-30P Gene

Drugs & Compounds for RNU4-30P Gene

No Compound Related Data Available

Transcripts for RNU4-30P Gene

mRNA/cDNA for RNU4-30P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-30P Gene

No ASD Table

Relevant External Links for RNU4-30P Gene

GeneLoc Exon Structure for
RNU4-30P
ECgene alternative splicing isoforms for
RNU4-30P

Expression for RNU4-30P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-30P Gene

genes like me logo Genes that share expression patterns with RNU4-30P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-30P Gene

Orthologs for RNU4-30P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-30P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia U4 34
  • 76 (a)
OneToMany
Gm26026 34
  • 66 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4 34
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 52 (a)
OneToOne
Species where no ortholog for RNU4-30P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-30P Gene

ENSEMBL:
Gene Tree for RNU4-30P (if available)
TreeFam:
Gene Tree for RNU4-30P (if available)

Paralogs for RNU4-30P Gene

No data available for Paralogs for RNU4-30P Gene

Variants for RNU4-30P Gene

Additional Variant Information for RNU4-30P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-30P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-30P Gene

Disorders for RNU4-30P Gene

No disorders were found for RNU4-30P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-30P Gene

Publications for RNU4-30P Gene

No publications were found for RNU4-30P Gene.

Products for RNU4-30P Gene

Sources for RNU4-30P Gene

Content
Loading form....