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Aliases for RNU4-25P Gene

Subcategory (RNA class) for RNU4-25P Gene

lncRNA

Aliases for RNU4-25P Gene

  • RNA, U4 Small Nuclear 25, Pseudogene 2 3 5

External Ids for RNU4-25P Gene

ORGUL Members for RNU4-25P Gene

Previous GeneCards Identifiers for RNU4-25P Gene

  • GC08M129023

Summaries for RNU4-25P Gene

GeneCards Summary for RNU4-25P Gene

RNU4-25P (RNA, U4 Small Nuclear 25, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RNU4-25P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-25P Gene

Genomics for RNU4-25P Gene

GeneHancer (GH) Regulatory Elements for RNU4-25P Gene

Promoters and enhancers for RNU4-25P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I128006 Enhancer 0.6 dbSUPER 550.8 +2.0 1966 4.8 L3MBTL2 CEBPB MNT CEBPG EP300 ZNF592 FOXA1 CREB1 KDM1A FOS MIR1206 RNU4-25P ENSG00000278275 MIR1207 TMEM75 MYC CASC11 RNU1-106P PVT1
GH08I128032 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -23.8 -23802 3.5 HDGF PKNOX1 ATF1 FOXA2 NEUROD1 SIN3A ZBTB7B ELK1 E2F8 FOS SRRM1P1 RNU4-25P RNU1-106P TMEM75 MIR1208 MIR1207 PVT1
GH08I128045 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -37.7 -37734 6.2 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT IRF4 ZNF766 ZNF143 FOS JUNB MIR1207 RNU1-106P SRRM1P1 RNU4-25P MIR1205 TMEM75 MIR1208 PVT1
GH08I128171 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -165.8 -165772 9.3 YBX1 FEZF1 DMAP1 YY1 E2F8 ZNF548 NFYC PPARGC1A MEF2D GLIS1 MIR1208 MIR1207 CASC11 MYC RNU4-25P GC08P128172 GC08P128221
GH08I127972 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +32.8 32849 9.5 HDAC1 PKNOX1 ZFP64 TCF12 ZNF766 ZNF143 ETV6 ATF7 RCOR1 RUNX3 PVT1 RNU1-106P TMEM75 RNU4-25P MIR1207 MIR1204 MYC CASC11 GC08P127985 MIR1205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-25P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-25P Gene

Genomic Locations for RNU4-25P Gene
chr8:128,010,382-128,010,611
(GRCh38/hg38)
Size:
230 bases
Orientation:
Minus strand
chr8:129,022,628-129,022,857
(GRCh37/hg19)

Genomic View for RNU4-25P Gene

Genes around RNU4-25P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-25P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-25P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-25P Gene

Proteins for RNU4-25P Gene

Post-translational modifications for RNU4-25P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-25P Gene

Domains & Families for RNU4-25P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-25P Gene

Function for RNU4-25P Gene

Phenotypes From GWAS Catalog for RNU4-25P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-25P Gene

Localization for RNU4-25P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-25P Gene

Pathways & Interactions for RNU4-25P Gene

SuperPathways for RNU4-25P Gene

No Data Available

Interacting Proteins for RNU4-25P Gene

Gene Ontology (GO) - Biological Process for RNU4-25P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-25P Gene

Drugs & Compounds for RNU4-25P Gene

No Compound Related Data Available

Transcripts for RNU4-25P Gene

mRNA/cDNA for RNU4-25P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-25P Gene

No ASD Table

Relevant External Links for RNU4-25P Gene

GeneLoc Exon Structure for
RNU4-25P
ECgene alternative splicing isoforms for
RNU4-25P

Expression for RNU4-25P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-25P Gene

Orthologs for RNU4-25P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-25P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22098 34
  • 72 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U4 34
  • 61 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U4 34
  • 56 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 45 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U4 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 55 (a)
OneToMany
Species where no ortholog for RNU4-25P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-25P Gene

ENSEMBL:
Gene Tree for RNU4-25P (if available)
TreeFam:
Gene Tree for RNU4-25P (if available)

Paralogs for RNU4-25P Gene

No data available for Paralogs for RNU4-25P Gene

Variants for RNU4-25P Gene

Additional Variant Information for RNU4-25P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-25P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-25P Gene

Disorders for RNU4-25P Gene

No disorders were found for RNU4-25P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-25P Gene

Publications for RNU4-25P Gene

No publications were found for RNU4-25P Gene.

Products for RNU4-25P Gene

Sources for RNU4-25P Gene

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