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Aliases for RNU4-22P Gene

Aliases for RNU4-22P Gene

  • RNA, U4 Small Nuclear 22, Pseudogene 2 3 5

External Ids for RNU4-22P Gene

Previous GeneCards Identifiers for RNU4-22P Gene

  • GC14P088980

Summaries for RNU4-22P Gene

GeneCards Summary for RNU4-22P Gene

RNU4-22P (RNA, U4 Small Nuclear 22, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-22P Gene

Genomics for RNU4-22P Gene

Regulatory Elements for RNU4-22P Gene

Enhancers for RNU4-22P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F088487 0.2 ENCODE 18.2 -24.9 -24919 2.8 E2F1 ZFHX2 GATA3 TCF7L2 EGR2 SPATA7 RNU4-22P PTPN21 LOC105370614
GH14F088467 0.6 ENCODE 18.1 -44.6 -44597 2.3 DPF2 MNT MBD2 GATA3 JUND IKZF1 FOSL2 FOS CUX1 RNU4-22P SPATA7 LOC105370614
GH14F088829 1.2 Ensembl ENCODE 12 +317.3 317312 3.2 SAP130 FEZF1 CEBPG RAD21 ZNF121 ZNF316 POLR2A HNF4G NFE2 MAFK RNU4-22P EML5 LOC105370614 SPATA7 GC14P088843 TTC8
GH14F088930 0.5 ENCODE 6 +419.7 419729 4.5 ZNF263 PKNOX1 RFX1 FEZF1 MNT BMI1 ZNF623 RFX3 POLR2A GLIS1 RNU4-22P GC14P088982 GC14M091249
GH14F089388 1 Ensembl ENCODE 4.3 +878.4 878403 7.4 PKNOX1 MLX ARID4B FEZF1 DMAP1 SLC30A9 KLF7 FOS PAF1 MXD4 FOXN3 ENSG00000252655 RNU4-22P LOC105370614 ENSG00000258380 ENSG00000258699
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU4-22P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4-22P Gene

Chromosome:
14
Start:
88,513,498 bp from pter
End:
88,513,663 bp from pter
Size:
166 bases
Orientation:
Plus strand

Genomic View for RNU4-22P Gene

Genes around RNU4-22P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-22P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-22P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-22P Gene

Proteins for RNU4-22P Gene

Post-translational modifications for RNU4-22P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-22P Gene

Domains & Families for RNU4-22P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-22P Gene

Function for RNU4-22P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-22P Gene

Localization for RNU4-22P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU4-22P Gene

Pathways & Interactions for RNU4-22P Gene

SuperPathways for RNU4-22P Gene

No Data Available

Interacting Proteins for RNU4-22P Gene

Gene Ontology (GO) - Biological Process for RNU4-22P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-22P Gene

Transcripts for RNU4-22P Gene

mRNA/cDNA for RNU4-22P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-22P Gene

No ASD Table

Relevant External Links for RNU4-22P Gene

GeneLoc Exon Structure for
RNU4-22P
ECgene alternative splicing isoforms for
RNU4-22P

Expression for RNU4-22P Gene

mRNA expression in normal human tissues for RNU4-22P Gene

mRNA differential expression in normal tissues according to GTEx for RNU4-22P Gene

This gene is overexpressed in Ovary (x4.1).
genes like me logo Genes that share expression patterns with RNU4-22P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU4-22P Gene

Orthologs for RNU4-22P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-22P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 35
  • 69 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25279 35
  • 56 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U4 35
  • 44 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U4 35
  • 43 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U4 35
  • 69 (a)
OneToMany
Species where no ortholog for RNU4-22P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-22P Gene

ENSEMBL:
Gene Tree for RNU4-22P (if available)
TreeFam:
Gene Tree for RNU4-22P (if available)

Paralogs for RNU4-22P Gene

No data available for Paralogs for RNU4-22P Gene

Variants for RNU4-22P Gene

Relevant External Links for RNU4-22P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-22P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-22P Gene

Disorders for RNU4-22P Gene

No disorders were found for RNU4-22P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-22P Gene

Publications for RNU4-22P Gene

No publications were found for RNU4-22P Gene.

Products for RNU4-22P Gene

Sources for RNU4-22P Gene

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