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Aliases for RNU4-20P Gene

Subcategory (RNA class) for RNU4-20P Gene

snRNA

Aliases for RNU4-20P Gene

  • RNA, U4 Small Nuclear 20, Pseudogene 2 3 5

External Ids for RNU4-20P Gene

ORGUL Members for RNU4-20P Gene

Previous GeneCards Identifiers for RNU4-20P Gene

  • GC12M059982

Summaries for RNU4-20P Gene

GeneCards Summary for RNU4-20P Gene

RNU4-20P (RNA, U4 Small Nuclear 20, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-20P Gene

Genomics for RNU4-20P Gene

Regulatory Elements for RNU4-20P Gene

Enhancers for RNU4-20P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G059620 0.9 FANTOM5 Ensembl ENCODE 11.4 -33.8 -33811 0.9 MAFK RNU4-20P GC12P059617 ENSG00000257146
GH12G059650 0.7 Ensembl ENCODE 11.8 -64.7 -64688 1.4 CTCF SOX13 GATA3 SLC16A7 RNU4-20P GC12P059617 ENSG00000257146
GH12G059672 0.6 dbSUPER 11.6 -89.5 -89471 8.4 ZNF680 ZNF687 TEAD4 ZBTB40 ATF2 RAD21 GATA3 FOS FOSL2 MAFK SLC16A7 RNU4-20P ENSG00000257146 GC12P059617
GH12G059838 0.6 ENCODE 10.7 -252.6 -252599 1.9 JUN NR2F2 ZNF316 GATA2 FOXP2 FOS CUX1 MAFK EMSY RNU4-20P SLC16A7 LOC100996696 PIR33345
GH12G059663 0.5 dbSUPER 11 -80.7 -80692 8.6 CTCF ZNF585B HNF4A MAFK ZBTB7B SLC16A7 RNU4-20P GC12P059617 ENSG00000257146
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU4-20P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU4-20P Gene

Chromosome:
12
Start:
59,586,793 bp from pter
End:
59,586,943 bp from pter
Size:
151 bases
Orientation:
Minus strand

Genomic View for RNU4-20P Gene

Genes around RNU4-20P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-20P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-20P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-20P Gene

Proteins for RNU4-20P Gene

Post-translational modifications for RNU4-20P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-20P Gene

Domains & Families for RNU4-20P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-20P Gene

Function for RNU4-20P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-20P Gene

Localization for RNU4-20P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU4-20P Gene

Pathways & Interactions for RNU4-20P Gene

SuperPathways for RNU4-20P Gene

No Data Available

Interacting Proteins for RNU4-20P Gene

Gene Ontology (GO) - Biological Process for RNU4-20P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-20P Gene

Drugs & Compounds for RNU4-20P Gene

No Compound Related Data Available

Transcripts for RNU4-20P Gene

mRNA/cDNA for RNU4-20P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-20P Gene

No ASD Table

Relevant External Links for RNU4-20P Gene

GeneLoc Exon Structure for
RNU4-20P
ECgene alternative splicing isoforms for
RNU4-20P

Expression for RNU4-20P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-20P Gene

genes like me logo Genes that share expression patterns with RNU4-20P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-20P Gene

Orthologs for RNU4-20P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-20P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 35
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 35
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 35
  • 70 (a)
ManyToMany
Species where no ortholog for RNU4-20P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-20P Gene

ENSEMBL:
Gene Tree for RNU4-20P (if available)
TreeFam:
Gene Tree for RNU4-20P (if available)

Paralogs for RNU4-20P Gene

No data available for Paralogs for RNU4-20P Gene

Variants for RNU4-20P Gene

Relevant External Links for RNU4-20P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-20P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-20P Gene

Disorders for RNU4-20P Gene

No disorders were found for RNU4-20P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-20P Gene

Publications for RNU4-20P Gene

No publications were found for RNU4-20P Gene.

Products for RNU4-20P Gene

Sources for RNU4-20P Gene

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